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Table 5 The MMR performances of ClusterONE on PPI datasets using the MIPS gold standard

From: Integrating PPI datasets with the PPI data from biomedical literature for protein complex detection

Threshold

Collins

Gavin

Krogan-core

Krogan-extended

BioGRID

Avg.Δ

Origin

0.3465

0.3125

0.3049

0.3103

0.2876

 

0

0.3456

0.3069

0.3154

0.3277

0.2907

 

-0.1

0.3482

0.3069

0.3143

0.3275

0.2901

 

-0.2

0.3488

0.3142

0.316

0.3298

0.2726

 

-0.3

0.3504

0.3102

0.3181

0.3302

0.2781

 

-0.4

0.3502

0.3118

0.3232

0.3334

0.2902

 

-0.5

0.3504

0.3163

0.3234

0.3348

0.3007

 

-0.6

0.3495

0.3216

0.3236

0.3338

0.2945

 

-0.7

0.3564

0.323

0.3172

0.3258

0.2978

 

-0.8

0.3549

0.3226

0.3236

0.3195

0.3005

 

-0.9

0.3534

0.3213

0.3149

0.3231

0.2913

 

Δ(-0.6)

0.87%

2.91%

6.13%

7.57%

2.40%

3.976%