Integrating PPI datasets with the PPI data from biomedical literature for protein complex detection

BMC Medical Genomics

Table 9 The fraction of matched complexes with a given overlap score threshold (ω ≥ 0.25) of ClusterONE on PPI datasets using the SGD gold standard

Threshold	Collins		Gavin		Krogan-core		Krogan-extended		BioGRID
	#cluster	#matched	#cluster	#matched	#cluster	#matched	#cluster	#matched	#cluster	#matched
Origin	195	105	194	99	522	168	531	175	472	157
0	210	112	226	107	520	187	622	202	487	156
-0.1	208	113	226	107	522	189	619	204	488	154
-0.2	206	111	226	107	516	187	615	195	503	148
-0.3	214	112	229	110	504	184	610	200	509	140
-0.4	212	112	233	114	503	185	612	192	523	145
-0.5	211	110	241	112	499	184	613	194	554	147
-0.6	206	110	242	110	493	183	599	193	577	153
-0.7	209	114	253	114	484	182	602	198	601	143
-0.8	206	112	245	114	471	175	617	184	640	141
-0.9	206	111	242	117	470	175	608	194	679	142

ISSN: 1755-8794