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Table 9 The fraction of matched complexes with a given overlap score threshold (ω ≥ 0.25) of ClusterONE on PPI datasets using the SGD gold standard

From: Integrating PPI datasets with the PPI data from biomedical literature for protein complex detection

Threshold Collins Gavin Krogan-core Krogan-extended BioGRID
  #cluster #matched #cluster #matched #cluster #matched #cluster #matched #cluster #matched
Origin 195 105 194 99 522 168 531 175 472 157
0 210 112 226 107 520 187 622 202 487 156
-0.1 208 113 226 107 522 189 619 204 488 154
-0.2 206 111 226 107 516 187 615 195 503 148
-0.3 214 112 229 110 504 184 610 200 509 140
-0.4 212 112 233 114 503 185 612 192 523 145
-0.5 211 110 241 112 499 184 613 194 554 147
-0.6 206 110 242 110 493 183 599 193 577 153
-0.7 209 114 253 114 484 182 602 198 601 143
-0.8 206 112 245 114 471 175 617 184 640 141
-0.9 206 111 242 117 470 175 608 194 679 142