Table 1 Number of genes selected by each method.
Feature | DEG | DEG+GRN | DEG+GRN+Pathway | DEG+GRN+Pathway+SNV |
|---|---|---|---|---|
Fold change (KO / WT) | Number of candidate genes | Number of candidate genes | Number of candidate genes | Number of candidate genes |
More than 1, Less than 1 | 12298 | 8834 | 3436 | 2622 |
More than 1.1, Less than 0.91 | 8953 | 6264 | 2441 | 1861 |
More than 1.2, Less than 0.83 | 6466 | 4322 | 1683 | 1272 |
More than 1.3, Less than 0.77 | 4631 | 2986 | 1179 | 879 |
More than 1.4, Less than 0.71 | 3495 | 2125 | 845 | 629 |
More than 1.5, Less than 0.67 | 2712 | 1574 | 633 | 463 |
More than 1.6, Less than 0.63 | 2153 | 1184 | 478 | 343 |
More than 1.7, Less than 0.59 | 1750 | 914 | 364 | 257 |
More than 1.8, Less than 0.56 | 1439 | 718 | 284 | 203 |
More than 1.9, Less than 0.53 | 1235 | 562 | 233 | 165 |
More than 2.0, Less than 0.5 | 1064 | 456 | 192 | 135 |