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Table 1 Number of genes selected by each method.

From: Combined analysis of gene regulatory network and SNV information enhances identification of potential gene markers in mouse knockout studies with small number of samples

Feature DEG DEG+GRN DEG+GRN+Pathway DEG+GRN+Pathway+SNV
Fold change (KO / WT) Number of candidate genes Number of candidate genes Number of candidate genes Number of candidate genes
More than 1, Less than 1 12298 8834 3436 2622
More than 1.1, Less than 0.91 8953 6264 2441 1861
More than 1.2, Less than 0.83 6466 4322 1683 1272
More than 1.3, Less than 0.77 4631 2986 1179 879
More than 1.4, Less than 0.71 3495 2125 845 629
More than 1.5, Less than 0.67 2712 1574 633 463
More than 1.6, Less than 0.63 2153 1184 478 343
More than 1.7, Less than 0.59 1750 914 364 257
More than 1.8, Less than 0.56 1439 718 284 203
More than 1.9, Less than 0.53 1235 562 233 165
More than 2.0, Less than 0.5 1064 456 192 135