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Table 2 Performance comparison of gene marker prediction methods.

From: Combined analysis of gene regulatory network and SNV information enhances identification of potential gene markers in mouse knockout studies with small number of samples

Gene Symbol NONE DEG DEG+GRN DEG+GRN+Pathway DEG+GRN+Pathway+SNV
Relb HIT HIT HIT HIT HIT
Nfkb2 HIT HIT HIT HIT HIT
Tnfrsf9 HIT HIT HIT HIT HIT
Tnfrsf21      
Icos HIT HIT HIT HIT HIT
Il2ra HIT HIT HIT HIT HIT
Cysltr1 HIT HIT    
Kit HIT HIT HIT HIT HIT
Il1r2 HIT HIT HIT HIT  
Il13 HIT HIT HIT HIT HIT
Il5 HIT HIT HIT HIT HIT
Areg HIT HIT HIT HIT HIT
Il1rl1 HIT HIT HIT   
Ccr8 HIT HIT    
Tph1 HIT HIT    
Htr1b      
Cd244 HIT HIT HIT HIT  
Lta HIT HIT HIT HIT  
Il10 HIT HIT HIT HIT HIT
Tnf HIT HIT HIT HIT HIT
Nfkbia HIT HIT HIT HIT  
Cdkn2b HIT HIT HIT HIT HIT
Lif HIT HIT HIT HIT HIT
Il2ra HIT HIT HIT HIT HIT
Il9r HIT HIT    
Il24      
Num of Hits 23 23 19 18 14
Selected Candidates 12298 2153 1184 478 343
Precision 0.002 0.011 0.016 0.038 0.041
Recall 0.885 0.885 0.731 0.692 0.538
F-measure 0.004 0.021 0.032 0.073 0.076
Accuracy 0.002 0.827 0.905 0.962 0.972