Table 2 Performance comparison of gene marker prediction methods.
Gene Symbol | NONE | DEG | DEG+GRN | DEG+GRN+Pathway | DEG+GRN+Pathway+SNV |
|---|---|---|---|---|---|
Relb | HIT | HIT | HIT | HIT | HIT |
Nfkb2 | HIT | HIT | HIT | HIT | HIT |
Tnfrsf9 | HIT | HIT | HIT | HIT | HIT |
Tnfrsf21 | Â | Â | Â | Â | Â |
Icos | HIT | HIT | HIT | HIT | HIT |
Il2ra | HIT | HIT | HIT | HIT | HIT |
Cysltr1 | HIT | HIT | Â | Â | Â |
Kit | HIT | HIT | HIT | HIT | HIT |
Il1r2 | HIT | HIT | HIT | HIT | Â |
Il13 | HIT | HIT | HIT | HIT | HIT |
Il5 | HIT | HIT | HIT | HIT | HIT |
Areg | HIT | HIT | HIT | HIT | HIT |
Il1rl1 | HIT | HIT | HIT | Â | Â |
Ccr8 | HIT | HIT | Â | Â | Â |
Tph1 | HIT | HIT | Â | Â | Â |
Htr1b | Â | Â | Â | Â | Â |
Cd244 | HIT | HIT | HIT | HIT | Â |
Lta | HIT | HIT | HIT | HIT | Â |
Il10 | HIT | HIT | HIT | HIT | HIT |
Tnf | HIT | HIT | HIT | HIT | HIT |
Nfkbia | HIT | HIT | HIT | HIT | Â |
Cdkn2b | HIT | HIT | HIT | HIT | HIT |
Lif | HIT | HIT | HIT | HIT | HIT |
Il2ra | HIT | HIT | HIT | HIT | HIT |
Il9r | HIT | HIT | Â | Â | Â |
Il24 | Â | Â | Â | Â | Â |
Num of Hits | 23 | 23 | 19 | 18 | 14 |
Selected Candidates | 12298 | 2153 | 1184 | 478 | 343 |
Precision | 0.002 | 0.011 | 0.016 | 0.038 | 0.041 |
Recall | 0.885 | 0.885 | 0.731 | 0.692 | 0.538 |
F-measure | 0.004 | 0.021 | 0.032 | 0.073 | 0.076 |
Accuracy | 0.002 | 0.827 | 0.905 | 0.962 | 0.972 |