Figure 3
From: PDEGEM: Modeling non-uniform read distribution in RNA-Seq data
Fitting counts for the mouse Rp19 gene. Black vertical lines represent counts (experimental values or fitted values) along the Grimmond EB Rp19 gene (with the UTR and a further 100 nucleotides truncated). We use the other 99 genes of the top 100 genes to train the three models and then predict the counts for the Rp19 gene.(a) Counts of reads (true values) in the Grimmond EB data.(b) Counts of fitted reads using mseq. (c) Counts of fitted reads using MART. (d) Counts of fitted reads using PDEGEM.