|
RPKM
|
MART
|
PDEGEM
|
---|
R
2
|
−
1
|
0.30
|
0.54
|
SRCC2
|
0.8341
|
0.8501
|
0.8655
|
- Spearman's rank correlation coefficient of RPKM, MART, PDEGEM with the true transcript abundance measured by transcript concentration in the experiment [25]. We compared four different methods using a synthetic RNA-Seq dataset with 90 isoforms. The number in bold indicates the highest R2 among three methods for the dataset.
- 1RPKM has no R2.
- 2 Spearman's rank correlation coefficient.