PDEGEM: Modeling non-uniform read distribution in RNA-Seq data

BMC Medical Genomics

Table 4 R² for 3 models in Dataset 3.

Sample	Poisson-Linear	MART	PDEGEM
SRX000571¹	0.15	0.50	0.61
SRX000604¹	0.12	0.48	0.59
SRX000605²	0.15	0.53	0.60
SRX000606²	0.13	0.52	0.59

Goodness-of-fit measured by R² for Poisson-Linear model, MART and PDEGEM in four RNA-Seq samples in Data Set 3. The four samples came from human kidney and liver. For each row, the number in bold indicates the highest R² among different methods for the dataset
¹Illumina sequencing of Human liver transcripts.
²Illumina sequencing of Human kidney transcripts.

ISSN: 1755-8794