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Table 3 Enriched GO terms and KEGG pathways for over expressed genes in tumors

From: Relating hepatocellular carcinoma tumor samples and cell lines using gene expression data in translational research

 

Term

P Value

Benjamini (<0.1)

Cellular Component

GO:0005576~extracellular region

8.85E-11

2.22E-08

 

GO:0005615~extracellular space

2.87E-08

3.60E-06

 

GO:0044421~extracellular region part

5.49E-08

4.59E-06

 

GO:0031226~intrinsic to plasma membrane

3.24E-05

2.03E-03

 

GO:0005887~integral to plasma membrane

4.03E-05

2.02E-03

 

GO:0005886~plasma membrane

5.35E-04

2.21E-02

 

GO:0005626~insoluble fraction

6.52E-04

2.31E-02

 

GO:0005624~membrane fraction

7.56E-04

2.35E-02

 

GO:0044459~plasma membrane part

1.44E-03

3.94E-02

 

GO:0000267~cell fraction

1.62E-03

3.98E-02

 

GO:0005792~microsome

2.90E-03

6.42E-02

 

GO:0042598~vesicular fraction

3.65E-03

7.36E-02

Biological Process

GO:0006955~immune response

4.00E-11

6.31E-08

 

GO:0009611~response to wounding

9.12E-10

7.19E-07

 

GO:0006952~defense response

3.32E-09

1.75E-06

 

GO:0002253~activation of immune response

2.74E-07

1.08E-04

 

GO:0006954~inflammatory response

4.09E-07

1.29E-04

 

GO:0050778~positive regulation of immune response

9.19E-07

2.42E-04

 

GO:0006956~complement activation

1.26E-06

2.83E-04

 

GO:0002541~activation of plasma proteins involved in acute inflammatory response

1.52E-06

2.99E-04

 

GO:0006959~humoral immune response

2.98E-06

5.22E-04

 

GO:0006958~complement activation, classical pathway

1.70E-05

2.68E-03

 

GO:0002684~positive regulation of immune system process

1.77E-05

2.54E-03

 

GO:0002526~acute inflammatory response

2.09E-05

2.75E-03

 

GO:0002455~humoral immune response mediated by circulating immunoglobulin

2.55E-05

3.09E-03

 

GO:0048584~positive regulation of response to stimulus

6.24E-05

7.00E-03

 

GO:0045087~innate immune response

8.20E-05

8.58E-03

KEGG pathway

hsa04610:Complement and coagulation cascades

1.40E-07

1.66E-05

 

hsa00982:Drug metabolism

1.78E-03

9.99E-02

 

hsa02010:ABC transporters

2.12E-03

8.02E-02