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Table 2 Comparative analysis of read elongation tools.

From: Konnector v2.0: pseudo-long reads from paired-end sequencing data

  Running time
(hms)
Peak memory
(MB)
N50
(bp)
Misassembled Reads Length
(bp)
Percent genome coverage
E. coli (synthetic)
ELOPER 10m46s 19013 501 16146 100.00
GapFiller 32m39s 476 396 14103 100.00
MaSuRCA super-reads 2m56s 4669 54103 0 100.00
Konnector (k = 50) 6m15s 81 406 3133 100.00
Konnector 2 (k = 70) 5m0s 100 32012 276 99.99
S. cerevisiae
ELOPER 97h55m23s 37119 144 71426 99.32
GapFiller 3h13m18s 666 332 96869 97.04
MaSuRCA super-reads 4m2s 5294 1684 129828 98.67
Konnector (k = 50) 8m34s 231 315 75435 97.94
Konnector 2 (k = 40) 7m1s 232 4690 67505 98.99
C. elegans
ELOPER exceeds available memory (120GB)
GapFiller exceeds available memory (120GB)
MaSuRCA super-reads 2h2m17s 80742 2554 1925740 99.98
Konnector (k = 55) 5h5m21s 1954 475 NA 99.80
Konnector 2 (k = 80) 3h30m23s 2193 6232 837480 99.88
H. sapiens (NA19238)
ELOPER not attempted
GapFiller not attempted
MaSuRCA super-reads exceeds available memory (120 GB)
Konnector (k = 150) 4d9h15m48s 410381 556 NA 94.15
Konnector 2 (k = 180) 20h47m24s 471905 3051 NA 94.01