Table 3 Performance evaluation of Sealer and other gap-filling applications for finishing draft genomes.
From: Konnector v2.0: pseudo-long reads from paired-end sequencing data
Draft genome species | Total gaps | Software | Gaps completely closed | % Success | Wall clock time (hh:mm) | Memory (GB) |
|---|---|---|---|---|---|---|
E. coli | 18 | Sealer K2 | 17 | 94.4 | 00:01 | 0.5 |
Sealer K1 | 17 | 94.4 | 00:20 | 0.5 | ||
GapCloser | 2 | 11.1 | 00:05 | 25.7 | ||
GapFiller | 15 | 83.3 | 00:43 | 0.4 | ||
H. sapiens | 237,406 | Sealer K2 | 127,242 | 53.6 | 12:09 | 22.2 |
Sealer K1 | 120,676 | 50.8 | 29:19 | 22.2 | ||
GapCloser | 116,297 | 48.9 | 83:15 | 178.1 | ||
GapFiller | Incomplete. Terminated after 353 hours. | |||||