Table 4 Biologically significant TR detected by MixTaR from the genome L.
From: Hybrid de novo tandem repeat detection using short and long reads
Name | Gene | Pattern length | Copy number | LR-EP x20 | LR-CEP x20 | LR-EP x100 | LR-CEP x100 |
|---|---|---|---|---|---|---|---|
LPG0451 | 30 bp | 5.9 | Complete | - | - | - | |
LPG0688 | 9 bp | 6 | Complete | Complete | Complete | Complete | |
LPG1038 | 12 bp | 4.17 | Complete | Complete | Complete | Complete | |
Lpms35 | LPG1299 | 18 bp | 3 | Complete | - | - | - |
LPG1555 | 21 bp | 2 | Complete | Complete | Complete | Complete | |
LPG1602 | 90 bp | 9.2 | Complete | Complete | Complete | Complete | |
LPG1948 | 90 bp | 7.08 | Complete | - | Complete | - | |
LPG1958 | 87 bp | 13.59 | Complete | - | Complete | - | |
LPG2392 | 87 bp | 6.49 | - | - | - | - | |
LPG2559 | 12 bp | 4.08 | Complete | Complete | Complete | Complete | |
Lpms31 | LPG2644 | 45 bp | 19.44 | Incomplete | Incomplete | Incomplete | Incomplete |
(11 copies) | (11 copies) | (11 copies) | (11 copies) | ||||
Lpms3 | LPG2793 | 96 bp | 7.58 | Complete | - | - | - |
Lpms01 | LPG2854 | 45 bp | 7.64 | Incomplete | - | - | - |
(6 copies) | |||||||
Lpms13 | LPG1488 | 24 bp | 9.75 | Incomplete | Incomplete | Incomplete | Incomplete |
(6 copies) | (6 copies) | (6 copies) | (6 copies) | ||||
Lpms17 | LPG0854 | 89 bp | 2.28 | - | Complete | - | Complete |
Lpms19 | Intergenic | 21 bp | 4.05 | - | Complete | - | Complete |