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Table 3 Definition of the top-10 properties ranked by the accuracy differences.

From: Prediction of linear B-cell epitopes of hepatitis C virus for vaccine development

Rank AAindex ID Description Difference
1 GEIM800102S Alpha-helix indices for alpha-proteins (Geisow-Roberts, 1980) 5.360
2 ISOY800107S Normalized relative frequency of double bend (Isogai et al., 1980) 5.360
3 SNEP660101 Principal component I (Sneath, 1966) 5.360
4 CHOP780215S Frequency of the 4th residue in turn (Chou-Fasman, 1978b) 5.165
5 BEGF750102S Conformational parameter of beta-structure (Beghin-Dirkx, 1975) 4.777
6 LEVM760106 van der Waals parameter R0 (Levitt, 1976) 4.777
7 OOBM850103 Optimized transfer energy parameter (Oobatake et al., 1985) 4.777
8 PRAM820103 Correlation coefficient in regression analysis (Prabhakaran-Ponnuswamy, 1982) 4.777
9 AURR980103S Normalized positional residue frequency at helix termini N" (Aurora-Rose, 1998) 4.777
10 WILM950104 Hydrophobicity coefficient in RP-HPLC, C18 with 0.1%TFA/2-PrOH/MeCN/H2O (Wilce et al. 1995) 4.777
  1. S: with secondary structure propensity;