Table 3 Definition of the top-10 properties ranked by the accuracy differences.
From: Prediction of linear B-cell epitopes of hepatitis C virus for vaccine development
Rank | AAindex ID | Description | Difference |
|---|---|---|---|
1 | GEIM800102S | Alpha-helix indices for alpha-proteins (Geisow-Roberts, 1980) | 5.360 |
2 | ISOY800107S | Normalized relative frequency of double bend (Isogai et al., 1980) | 5.360 |
3 | SNEP660101 | Principal component I (Sneath, 1966) | 5.360 |
4 | CHOP780215S | Frequency of the 4th residue in turn (Chou-Fasman, 1978b) | 5.165 |
5 | BEGF750102S | Conformational parameter of beta-structure (Beghin-Dirkx, 1975) | 4.777 |
6 | LEVM760106 | van der Waals parameter R0 (Levitt, 1976) | 4.777 |
7 | OOBM850103 | Optimized transfer energy parameter (Oobatake et al., 1985) | 4.777 |
8 | PRAM820103 | Correlation coefficient in regression analysis (Prabhakaran-Ponnuswamy, 1982) | 4.777 |
9 | AURR980103S | Normalized positional residue frequency at helix termini N" (Aurora-Rose, 1998) | 4.777 |
10 | WILM950104 | Hydrophobicity coefficient in RP-HPLC, C18 with 0.1%TFA/2-PrOH/MeCN/H2O (Wilce et al. 1995) | 4.777 |