TY - JOUR AU - Yang, M. H. AU - Jung, M. S. AU - Lee, M. J. AU - Yoo, K. H. AU - Yook, Y. J. AU - Park, E. Y. AU - Choi, S. H. AU - Suh, Y. J. AU - Kim, K. W. AU - Park, J. H. PY - 2008 DA - 2008// TI - Gene expression profiling of the rewarding effect caused by methamphetamine in the mesolimbic dopamine system JO - Mol Cells VL - 26 ID - Yang2008 ER - TY - JOUR AU - Elkashef, A. AU - Vocci, F. AU - Hanson, G. AU - White, J. AU - Wickes, W. AU - Tiihonen, J. PY - 2008 DA - 2008// TI - Pharmacotherapy of methamphetamine addiction: an update JO - Subst Abus VL - 29 UR - https://doi.org/10.1080/08897070802218554 DO - 10.1080/08897070802218554 ID - Elkashef2008 ER - TY - STD TI - SAMHSA: Results from the 2007 National Survey on Drug Use and Health: National Findings.Office of Applied Studies, NSDUH Series H-34, DHHS Publication No. SMA 08–4343. Rockville, MD: 2008. ID - ref3 ER - TY - JOUR AU - Akiyama, K. AU - Kanzaki, A. AU - Tsuchida, K. AU - Ujike, H. PY - 1994 DA - 1994// TI - Methamphetamine-induced behavioral sensitization and its implications for relapse of schizophrenia JO - Schizophr Res VL - 12 UR - https://doi.org/10.1016/0920-9964(94)90035-3 DO - 10.1016/0920-9964(94)90035-3 ID - Akiyama1994 ER - TY - JOUR AU - Anglin, M. D. AU - Burke, C. AU - Perrochet, B. AU - Stamper, E. AU - Dawud-Noursi, S. PY - 2000 DA - 2000// TI - History of the methamphetamine problem JO - J Psychoactive Drugs VL - 32 UR - https://doi.org/10.1080/02791072.2000.10400221 DO - 10.1080/02791072.2000.10400221 ID - Anglin2000 ER - TY - JOUR AU - Bisagno, V. AU - Ferguson, D. AU - Luine, V. N. PY - 2002 DA - 2002// TI - Short toxic methamphetamine schedule impairs object recognition task in male rats JO - Brain Res VL - 940 UR - https://doi.org/10.1016/S0006-8993(02)02599-4 DO - 10.1016/S0006-8993(02)02599-4 ID - Bisagno2002 ER - TY - JOUR AU - Nordahl, T. E. AU - Salo, R. AU - Leamon, M. PY - 2003 DA - 2003// TI - Neuropsychological effects of chronic methamphetamine use on neurotransmitters and cognition: a review JO - J Neuropsychiatry Clin Neurosci VL - 15 UR - https://doi.org/10.1176/jnp.15.3.317 DO - 10.1176/jnp.15.3.317 ID - Nordahl2003 ER - TY - JOUR AU - Schroder, N. AU - O’Dell, S. J. AU - Marshall, J. F. PY - 2003 DA - 2003// TI - Neurotoxic methamphetamine regimen severely impairs recognition memory in rats JO - Synapse VL - 49 UR - https://doi.org/10.1002/syn.10210 DO - 10.1002/syn.10210 ID - Schroder2003 ER - TY - JOUR AU - Okochi, T. AU - Kishi, T. AU - Ikeda, M. AU - Kitajima, T. AU - Kinoshita, Y. AU - Kawashima, K. AU - Okumura, T. AU - Tsunoka, T. AU - Inada, T. AU - Yamada, M. AU - Uchimura, N. AU - Iyo, M. AU - Sora, I. AU - Ozaki, N. AU - Ujike, H. AU - Iwata, N. PY - 2009 DA - 2009// TI - Genetic association analysis of NRG1 with methamphetamine-induced psychosis in a Japanese population JO - Prog Neuropsychopharmacol Biol Psychiatry VL - 33 UR - https://doi.org/10.1016/j.pnpbp.2009.04.016 DO - 10.1016/j.pnpbp.2009.04.016 ID - Okochi2009 ER - TY - JOUR AU - Davidson, C. AU - Gow, A. J. AU - Lee, T. H. AU - Ellinwood, E. H. PY - 2001 DA - 2001// TI - Methamphetamine neurotoxicity: necrotic and apoptotic mechanisms and relevance to human abuse and treatment JO - Brain Res Brain Res Rev VL - 36 UR - https://doi.org/10.1016/S0165-0173(01)00054-6 DO - 10.1016/S0165-0173(01)00054-6 ID - Davidson2001 ER - TY - JOUR AU - Ricaurte, G. A. AU - Guillery, R. W. AU - Seiden, L. S. AU - Schuster, C. R. AU - Moore, R. Y. PY - 1982 DA - 1982// TI - Dopamine nerve terminal degeneration produced by high doses of methylamphetamine in the rat brain JO - Brain Res VL - 235 UR - https://doi.org/10.1016/0006-8993(82)90198-6 DO - 10.1016/0006-8993(82)90198-6 ID - Ricaurte1982 ER - TY - JOUR AU - Rocher, C. AU - Gardier, A. M. PY - 2001 DA - 2001// TI - Effects of repeated systemic administration of d-Fenfluramine on serotonin and glutamate release in rat ventral hippocampus: comparison with methamphetamine using in vivo microdialysis JO - Naunyn Schmiedebergs Arch Pharmacol VL - 363 UR - https://doi.org/10.1007/s002100000381 DO - 10.1007/s002100000381 ID - Rocher2001 ER - TY - JOUR AU - Spina, M. B. AU - Cohen, G. PY - 1989 DA - 1989// TI - Dopamine turnover and glutathione oxidation: implications for Parkinson disease JO - Proc Natl Acad Sci U S A VL - 86 UR - https://doi.org/10.1073/pnas.86.4.1398 DO - 10.1073/pnas.86.4.1398 ID - Spina1989 ER - TY - JOUR AU - Tata, D. A. AU - Yamamoto, B. K. PY - 2007 DA - 2007// TI - Interactions between methamphetamine and environmental stress: role of oxidative stress, glutamate and mitochondrial dysfunction JO - Addiction VL - 102 UR - https://doi.org/10.1111/j.1360-0443.2007.01770.x DO - 10.1111/j.1360-0443.2007.01770.x ID - Tata2007 ER - TY - JOUR AU - Yamamoto, B. K. AU - Zhu, W. PY - 1998 DA - 1998// TI - The effects of methamphetamine on the production of free radicals and oxidative stress JO - J Pharmacol Exp Ther VL - 287 ID - Yamamoto1998 ER - TY - JOUR AU - Zhang, X. AU - Lee, T. H. AU - Xiong, X. AU - Chen, Q. AU - Davidson, C. AU - Wetsel, W. C. AU - Ellinwood, E. H. PY - 2006 DA - 2006// TI - Methamphetamine induces long-term changes in GABAA receptor alpha2 subunit and GAD67 expression JO - Biochem Biophys Res Commun VL - 351 UR - https://doi.org/10.1016/j.bbrc.2006.10.046 DO - 10.1016/j.bbrc.2006.10.046 ID - Zhang2006 ER - TY - JOUR AU - Johnson, B. A. AU - Ait-Daoud, N. AU - Elkashef, A. M. AU - Smith, E. V. AU - Kahn, R. AU - Vocci, F. AU - Li, S. H. AU - Bloch, D. A. PY - 2008 DA - 2008// TI - A preliminary randomized, double-blind, placebo-controlled study of the safety and efficacy of ondansetron in the treatment of methamphetamine dependence JO - Int J Neuropsychopharmacol VL - 11 UR - https://doi.org/10.1017/S1461145707007778 DO - 10.1017/S1461145707007778 ID - Johnson2008 ER - TY - JOUR AU - Maryanoff, B. E. AU - Nortey, S. O. AU - Gardocki, J. F. AU - Shank, R. P. AU - Dodgson, S. P. PY - 1987 DA - 1987// TI - Anticonvulsant O-alkyl sulfamates. 2,3:4,5-Bis-O-(1-methylethylidene)-beta-D-fructopyranose sulfamate and related compounds JO - J Med Chem VL - 30 UR - https://doi.org/10.1021/jm00388a023 DO - 10.1021/jm00388a023 ID - Maryanoff1987 ER - TY - JOUR AU - Johnson, B. A. AU - Ait-Daoud, N. AU - Bowden, C. L. AU - DiClemente, C. C. AU - Roache, J. D. AU - Lawson, K. AU - Javors, M. A. AU - Ma, J. Z. PY - 2003 DA - 2003// TI - Oral topiramate for treatment of alcohol dependence: a randomised controlled trial JO - Lancet VL - 361 UR - https://doi.org/10.1016/S0140-6736(03)13370-3 DO - 10.1016/S0140-6736(03)13370-3 ID - Johnson2003 ER - TY - JOUR AU - Johnson, B. A. AU - Ait-Daoud, N. AU - Akhtar, F. Z. AU - Javors, M. A. PY - 2005 DA - 2005// TI - Use of oral topiramate to promote smoking abstinence among alcohol-dependent smokers: a randomized controlled trial JO - Arch Intern Med VL - 165 UR - https://doi.org/10.1001/archinte.165.14.1600 DO - 10.1001/archinte.165.14.1600 ID - Johnson2005 ER - TY - JOUR AU - Kampman, K. M. AU - Pettinati, H. AU - Lynch, K. G. AU - Dackis, C. AU - Sparkman, T. AU - Weigley, C. AU - O’Brien, C. P. PY - 2004 DA - 2004// TI - A pilot trial of topiramate for the treatment of cocaine dependence JO - Drug Alcohol Depend VL - 75 UR - https://doi.org/10.1016/j.drugalcdep.2004.03.008 DO - 10.1016/j.drugalcdep.2004.03.008 ID - Kampman2004 ER - TY - JOUR AU - Johnson, B. A. AU - Roache, J. D. AU - Ait-Daoud, N. AU - Wells, L. T. AU - Wallace, C. L. AU - Dawes, M. A. AU - Liu, L. AU - Wang, X. Q. PY - 2007 DA - 2007// TI - Effects of topiramate on methamphetamine-induced changes in attentional and perceptual-motor skills of cognition in recently abstinent methamphetamine-dependent individuals JO - Prog Neuropsychopharmacol Biol Psychiatry VL - 31 UR - https://doi.org/10.1016/j.pnpbp.2006.08.002 DO - 10.1016/j.pnpbp.2006.08.002 ID - Johnson2007 ER - TY - JOUR AU - Johnson, B. A. AU - Roache, J. D. AU - Ait-Daoud, N. AU - Wells, L. T. AU - Wallace, C. L. AU - Dawes, M. A. AU - Liu, L. AU - Wang, X. Q. PY - 2007 DA - 2007// TI - Effects of acute topiramate dosing on methamphetamine-induced subjective mood JO - Int J Neuropsychopharmacol VL - 10 UR - https://doi.org/10.1017/S1461145705006401 DO - 10.1017/S1461145705006401 ID - Johnson2007 ER - TY - JOUR AU - Johnson, B. A. AU - Wells, L. T. AU - Roache, J. D. AU - Wallace, C. L. AU - Ait-Daoud, N. AU - Dawes, M. A. AU - Liu, L. AU - Wang, X. Q. AU - Javors, M. A. PY - 2007 DA - 2007// TI - Kinetic and cardiovascular effects of acute topiramate dosing among non-treatment-seeking, methamphetamine-dependent individuals JO - Prog Neuropsychopharmacol Biol Psychiatry VL - 31 UR - https://doi.org/10.1016/j.pnpbp.2006.11.011 DO - 10.1016/j.pnpbp.2006.11.011 ID - Johnson2007 ER - TY - JOUR AU - Zullino, D. F. AU - Benguettat, D. AU - Khazaal, Y. PY - 2007 DA - 2007// TI - Improvement of cognitive performance by topiramate: Blockage of automatic processes may be the underlying mechanism JO - Prog Neuropsychopharmacol Biol Psychiatry VL - 31 UR - https://doi.org/10.1016/j.pnpbp.2007.01.010 DO - 10.1016/j.pnpbp.2007.01.010 ID - Zullino2007 ER - TY - JOUR AU - Elkashef, A. AU - Kahn, R. AU - Yu, E. AU - Iturriaga, E. AU - Li, S. H. AU - Anderson, A. AU - Chiang, N. AU - Ait-Daoud, N. AU - Weiss, D. AU - McSherry, F. AU - Serpi, T. AU - Rawson, R. AU - Hrymoc, M. AU - Weis, D. AU - McCann, M. AU - Pham, T. AU - Stock, C. AU - Dickinson, R. AU - Campbell, J. AU - Gorodetzky, C. AU - Haning, W. AU - Carlton, B. AU - Mawhinney, J. AU - Li, M. D. AU - Johnson, B. A. PY - 2012 DA - 2012// TI - Topiramate for the treatment of methamphetamine addiction: a multi-center placebo-controlled trial JO - Addiction VL - 107 UR - https://doi.org/10.1111/j.1360-0443.2011.03771.x DO - 10.1111/j.1360-0443.2011.03771.x ID - Elkashef2012 ER - TY - JOUR AU - Mizoguchi, H. AU - Yamada, K. AU - Mizuno, M. AU - Mizuno, T. AU - Nitta, A. AU - Noda, Y. AU - Nabeshima, T. PY - 2004 DA - 2004// TI - Regulations of methamphetamine reward by extracellular signal-regulated kinase 1/2/ets-like gene-1 signaling pathway via the activation of dopamine receptors JO - Mol Pharmacol VL - 65 UR - https://doi.org/10.1124/mol.65.5.1293 DO - 10.1124/mol.65.5.1293 ID - Mizoguchi2004 ER - TY - JOUR AU - Kauer, J. A. AU - Malenka, R. C. PY - 2007 DA - 2007// TI - Synaptic plasticity and addiction JO - Nat Rev Neurosci VL - 8 UR - https://doi.org/10.1038/nrn2234 DO - 10.1038/nrn2234 ID - Kauer2007 ER - TY - JOUR AU - Narita, M. AU - Miyatake, M. AU - Shibasaki, M. AU - Tsuda, M. AU - Koizumi, S. AU - Yajima, Y. AU - Inoue, K. AU - Suzuki, T. PY - 2005 DA - 2005// TI - Long-lasting change in brain dynamics induced by methamphetamine: enhancement of protein kinase C-dependent astrocytic response and behavioral sensitization JO - J Neurochem VL - 93 UR - https://doi.org/10.1111/j.1471-4159.2005.03097.x DO - 10.1111/j.1471-4159.2005.03097.x ID - Narita2005 ER - TY - JOUR AU - Raffa, R. B. AU - Finno, K. E. AU - Tallarida, C. S. AU - Rawls, S. M. PY - 2010 DA - 2010// TI - Topiramate-antagonism of L-glutamate-induced paroxysms in planarians JO - Eur J Pharmacol VL - 649 UR - https://doi.org/10.1016/j.ejphar.2010.09.021 DO - 10.1016/j.ejphar.2010.09.021 ID - Raffa2010 ER - TY - JOUR AU - Rawls, S. M. AU - Thomas, T. AU - Adeola, M. AU - Patil, T. AU - Raymondi, N. AU - Poles, A. AU - Loo, M. AU - Raffa, R. B. PY - 2009 DA - 2009// TI - Topiramate antagonizes NMDA- and AMPA-induced seizure-like activity in planarians JO - Pharmacol Biochem Behav VL - 93 UR - https://doi.org/10.1016/j.pbb.2009.05.005 DO - 10.1016/j.pbb.2009.05.005 ID - Rawls2009 ER - TY - JOUR AU - Eun, J. W. AU - Kwack, S. J. AU - Noh, J. H. AU - Jung, K. H. AU - Kim, J. K. AU - Bae, H. J. AU - Xie, H. AU - Ryu, J. C. AU - Ahn, Y. M. AU - Park, W. S. AU - Lee, J. Y. AU - Rhee, G. S. AU - Nam, S. W. PY - 2010 DA - 2010// TI - Identification of post-generation effect of 3,4-methylenedioxymethamphetamine on the mouse brain by large-scale gene expression analysis JO - Toxicol Lett VL - 195 UR - https://doi.org/10.1016/j.toxlet.2010.02.013 DO - 10.1016/j.toxlet.2010.02.013 ID - Eun2010 ER - TY - JOUR AU - Simoes, P. F. AU - Silva, A. P. AU - Pereira, F. C. AU - Marques, E. AU - Grade, S. AU - Milhazes, N. AU - Borges, F. AU - Ribeiro, C. F. AU - Macedo, T. R. PY - 2007 DA - 2007// TI - Methamphetamine induces alterations on hippocampal NMDA and AMPA receptor subunit levels and impairs spatial working memory JO - Neuroscience VL - 150 UR - https://doi.org/10.1016/j.neuroscience.2007.09.044 DO - 10.1016/j.neuroscience.2007.09.044 ID - Simoes2007 ER - TY - JOUR AU - Betancur, C. AU - Sakurai, T. AU - Buxbaum, J. D. PY - 2009 DA - 2009// TI - The emerging role of synaptic cell-adhesion pathways in the pathogenesis of autism spectrum disorders JO - Trends Neurosci VL - 32 UR - https://doi.org/10.1016/j.tins.2009.04.003 DO - 10.1016/j.tins.2009.04.003 ID - Betancur2009 ER - TY - JOUR AU - Schluter, O. M. AU - Xu, W. AU - Malenka, R. C. PY - 2006 DA - 2006// TI - Alternative N-terminal domains of PSD-95 and SAP97 govern activity-dependent regulation of synaptic AMPA receptor function JO - Neuron VL - 51 UR - https://doi.org/10.1016/j.neuron.2006.05.016 DO - 10.1016/j.neuron.2006.05.016 ID - Schluter2006 ER - TY - JOUR AU - Nakagawa, T. AU - Futai, K. AU - Lashuel, H. A. AU - Lo, I. AU - Okamoto, K. AU - Walz, T. AU - Hayashi, Y. AU - Sheng, M. PY - 2004 DA - 2004// TI - Quaternary structure, protein dynamics, and synaptic function of SAP97 controlled by L27 domain interactions JO - Neuron VL - 44 UR - https://doi.org/10.1016/j.neuron.2004.10.012 DO - 10.1016/j.neuron.2004.10.012 ID - Nakagawa2004 ER - TY - JOUR AU - Mehta, S. AU - Wu, H. AU - Garner, C. C. AU - Marshall, J. PY - 2001 DA - 2001// TI - Molecular mechanisms regulating the differential association of kainate receptor subunits with SAP90/PSD-95 and SAP97 JO - J Biol Chem VL - 276 UR - https://doi.org/10.1074/jbc.M100643200 DO - 10.1074/jbc.M100643200 ID - Mehta2001 ER - TY - JOUR AU - Wang, L. AU - Piserchio, A. AU - Mierke, D. F. PY - 2005 DA - 2005// TI - Structural characterization of the intermolecular interactions of synapse-associated protein-97 with the NR2B subunit of N-methyl-D-aspartate receptors JO - J Biol Chem VL - 280 UR - https://doi.org/10.1074/jbc.M503555200 DO - 10.1074/jbc.M503555200 ID - Wang2005 ER - TY - JOUR AU - Mauceri, D. AU - Gardoni, F. AU - Marcello, E. AU - Di Luca, M. PY - 2007 DA - 2007// TI - Dual role of CaMKII-dependent SAP97 phosphorylation in mediating trafficking and insertion of NMDA receptor subunit NR2A JO - J Neurochem VL - 100 UR - https://doi.org/10.1111/j.1471-4159.2006.04267.x DO - 10.1111/j.1471-4159.2006.04267.x ID - Mauceri2007 ER - TY - JOUR AU - Suh, Y. H. AU - Terashima, A. AU - Petralia, R. S. AU - Wenthold, R. J. AU - Isaac, J. T. AU - Roche, K. W. AU - Roche, P. A. PY - 2010 DA - 2010// TI - A neuronal role for SNAP-23 in postsynaptic glutamate receptor trafficking JO - Nat Neurosci VL - 13 UR - https://doi.org/10.1038/nn.2488 DO - 10.1038/nn.2488 ID - Suh2010 ER - TY - JOUR AU - Wienecke, J. AU - Westerdahl, A. C. AU - Hultborn, H. AU - Kiehn, O. AU - Ryge, J. PY - 2010 DA - 2010// TI - Global gene expression analysis of rodent motor neurons following spinal cord injury associates molecular mechanisms with development of postinjury spasticity JO - J Neurophysiol VL - 103 UR - https://doi.org/10.1152/jn.00609.2009 DO - 10.1152/jn.00609.2009 ID - Wienecke2010 ER - TY - JOUR AU - Hiraoka, S. AU - Kajii, Y. AU - Kuroda, Y. AU - Umino, A. AU - Nishikawa, T. PY - 2010 DA - 2010// TI - The development- and phencyclidine-regulated induction of synapse-associated protein-97 gene in the rat neocortex JO - Eur Neuropsychopharmacol VL - 20 UR - https://doi.org/10.1016/j.euroneuro.2009.08.007 DO - 10.1016/j.euroneuro.2009.08.007 ID - Hiraoka2010 ER - TY - JOUR AU - Takaki, M. AU - Ujike, H. AU - Kodama, M. AU - Takehisa, Y. AU - Nakata, K. AU - Kuroda, S. PY - 2001 DA - 2001// TI - Two kinds of mitogen-activated protein kinase phosphatases, MKP-1 and MKP-3, are differentially activated by acute and chronic methamphetamine treatment in the rat brain JO - J Neurochem VL - 79 UR - https://doi.org/10.1046/j.1471-4159.2001.00615.x DO - 10.1046/j.1471-4159.2001.00615.x ID - Takaki2001 ER - TY - JOUR AU - Bhat, R. AU - Axtell, R. AU - Mitra, A. AU - Miranda, M. AU - Lock, C. AU - Tsien, R. W. AU - Steinman, L. PY - 2010 DA - 2010// TI - Inhibitory role for GABA in autoimmune inflammation JO - Proc Natl Acad Sci U S A VL - 107 UR - https://doi.org/10.1073/pnas.0915139107 DO - 10.1073/pnas.0915139107 ID - Bhat2010 ER - TY - JOUR AU - Sequeira, A. AU - Turecki, G. PY - 2006 DA - 2006// TI - Genome wide gene expression studies in mood disorders JO - OMICS VL - 10 UR - https://doi.org/10.1089/omi.2006.10.444 DO - 10.1089/omi.2006.10.444 ID - Sequeira2006 ER - TY - JOUR AU - Churchill, G. A. PY - 2002 DA - 2002// TI - Fundamentals of experimental design for cDNA microarrays JO - Nat Genet VL - 32 UR - https://doi.org/10.1038/ng1031 DO - 10.1038/ng1031 ID - Churchill2002 ER - TY - JOUR AU - van Leeuwen, D. M. AU - van Agen, E. AU - Gottschalk, R. W. AU - Vlietinck, R. AU - Gielen, M. AU - van Herwijnen, M. H. AU - Maas, L. M. AU - Kleinjans, J. C. AU - van Delft, J. H. PY - 2007 DA - 2007// TI - Cigarette smoke-induced differential gene expression in blood cells from monozygotic twin pairs JO - Carcinogenesis VL - 28 UR - https://doi.org/10.1093/carcin/bgl199 DO - 10.1093/carcin/bgl199 ID - van Leeuwen2007 ER - TY - JOUR AU - Lampe, J. W. AU - Stepaniants, S. B. AU - Mao, M. AU - Radich, J. P. AU - Dai, H. AU - Linsley, P. S. AU - Friend, S. H. AU - Potter, J. D. PY - 2004 DA - 2004// TI - Signatures of environmental exposures using peripheral leukocyte gene expression: tobacco smoke JO - Cancer Epidemiol Biomarkers Prev VL - 13 ID - Lampe2004 ER - TY - JOUR AU - Borovecki, F. AU - Lovrecic, L. AU - Zhou, J. AU - Jeong, H. AU - Then, F. AU - Rosas, H. D. AU - Hersch, S. M. AU - Hogarth, P. AU - Bouzou, B. AU - Jensen, R. V. AU - Krainc, D. PY - 2005 DA - 2005// TI - Genome-wide expression profiling of human blood reveals biomarkers for Huntington’s disease JO - Proc Natl Acad Sci U S A VL - 102 UR - https://doi.org/10.1073/pnas.0504921102 DO - 10.1073/pnas.0504921102 ID - Borovecki2005 ER - TY - JOUR AU - Whitney, A. R. AU - Diehn, M. AU - Popper, S. J. AU - Alizadeh, A. A. AU - Boldrick, J. C. AU - Relman, D. A. AU - Brown, P. O. PY - 2003 DA - 2003// TI - Individuality and variation in gene expression patterns in human blood JO - Proc Natl Acad Sci U S A VL - 100 UR - https://doi.org/10.1073/pnas.252784499 DO - 10.1073/pnas.252784499 ID - Whitney2003 ER - TY - JOUR AU - Dumeaux, V. AU - Johansen, J. AU - Borresen-Dale, A. L. AU - Lund, E. PY - 2006 DA - 2006// TI - Gene expression profiling of whole-blood samples from women exposed to hormone replacement therapy JO - Mol Cancer Ther VL - 5 UR - https://doi.org/10.1158/1535-7163.MCT-05-0329 DO - 10.1158/1535-7163.MCT-05-0329 ID - Dumeaux2006 ER - TY - JOUR AU - Sullivan, P. F. AU - Fan, C. AU - Perou, C. M. PY - 2006 DA - 2006// TI - Evaluating the comparability of gene expression in blood and brain JO - Am J Med Genet B Neuropsychiatr Genet VL - 141B UR - https://doi.org/10.1002/ajmg.b.30272 DO - 10.1002/ajmg.b.30272 ID - Sullivan2006 ER - TY - JOUR AU - Cai, C. AU - Langfelder, P. AU - Fuller, T. F. AU - Oldham, M. C. AU - Luo, R. AU - van den Berg, L. H. AU - Ophoff, R. A. AU - Horvath, S. PY - 2010 DA - 2010// TI - Is human blood a good surrogate for brain tissue in transcriptional studies? JO - BMC Genomics VL - 11 UR - https://doi.org/10.1186/1471-2164-11-589 DO - 10.1186/1471-2164-11-589 ID - Cai2010 ER - TY - JOUR AU - Li, C. PY - 2008 DA - 2008// TI - Automating dChip: toward reproducible sharing of microarray data analysis JO - BMC Bioinformatics VL - 9 UR - https://doi.org/10.1186/1471-2105-9-231 DO - 10.1186/1471-2105-9-231 ID - Li2008 ER - TY - JOUR AU - Irizarry, R. A. AU - Bolstad, B. M. AU - Collin, F. AU - Cope, L. M. AU - Hobbs, B. AU - Speed, T. P. PY - 2003 DA - 2003// TI - Summaries of Affymetrix GeneChip probe level data JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gng015 DO - 10.1093/nar/gng015 ID - Irizarry2003 ER - TY - JOUR AU - Gautier, L. AU - Cope, L. AU - Bolstad, B. M. AU - Irizarry, R. A. PY - 2004 DA - 2004// TI - Affy–analysis of Affymetrix GeneChip data at the probe level JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/btg405 DO - 10.1093/bioinformatics/btg405 ID - Gautier2004 ER - TY - JOUR AU - Calza, S. AU - Raffelsberger, W. AU - Ploner, A. AU - Sahel, J. AU - Leveillard, T. AU - Pawitan, Y. PY - 2007 DA - 2007// TI - Filtering genes to improve sensitivity in oligonucleotide microarray data analysis JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkm537 DO - 10.1093/nar/gkm537 ID - Calza2007 ER - TY - JOUR AU - McClintick, J. N. AU - Edenberg, H. J. PY - 2006 DA - 2006// TI - Effects of filtering by Present call on analysis of microarray experiments JO - BMC Bioinformatics VL - 7 UR - https://doi.org/10.1186/1471-2105-7-49 DO - 10.1186/1471-2105-7-49 ID - McClintick2006 ER - TY - JOUR AU - Rowe, W. B. AU - Blalock, E. M. AU - Chen, K. C. AU - Kadish, I. AU - Wang, D. AU - Barrett, J. E. AU - Thibault, O. AU - Porter, N. M. AU - Rose, G. M. AU - Landfield, P. W. PY - 2007 DA - 2007// TI - Hippocampal expression analyses reveal selective association of immediate-early, neuroenergetic, and myelinogenic pathways with cognitive impairment in aged rats JO - J Neurosci VL - 27 UR - https://doi.org/10.1523/JNEUROSCI.4163-06.2007 DO - 10.1523/JNEUROSCI.4163-06.2007 ID - Rowe2007 ER - TY - JOUR AU - Mutch, D. M. AU - Berger, A. AU - Mansourian, R. AU - Rytz, A. AU - Roberts, M. A. PY - 2002 DA - 2002// TI - The limit fold change model: a practical approach for selecting differentially expressed genes from microarray data JO - BMC Bioinformatics VL - 3 UR - https://doi.org/10.1186/1471-2105-3-17 DO - 10.1186/1471-2105-3-17 ID - Mutch2002 ER - TY - JOUR AU - Benjamini, Y. AU - Hochberg, Y. PY - 1995 DA - 1995// TI - Controlling the false discovery rate: a practical and powerful approach to multiple testing JO - J Royal Stat Soc Series B VL - 57 ID - Benjamini1995 ER - TY - JOUR AU - Nakatani, N. AU - Hattori, E. AU - Ohnishi, T. AU - Dean, B. AU - Iwayama, Y. AU - Matsumoto, I. AU - Kato, T. AU - Osumi, N. AU - Higuchi, T. AU - Niwa, S. AU - Yoshikawa, T. PY - 2006 DA - 2006// TI - Genome-wide expression analysis detects eight genes with robust alterations specific to bipolar I disorder: relevance to neuronal network perturbation JO - Hum Mol Genet VL - 15 UR - https://doi.org/10.1093/hmg/ddl118 DO - 10.1093/hmg/ddl118 ID - Nakatani2006 ER - TY - JOUR AU - Dozmorov, M. G. AU - Kyker, K. D. AU - Hauser, P. J. AU - Saban, R. AU - Buethe, D. D. AU - Dozmorov, I. AU - Centola, M. B. AU - Culkin, D. J. AU - Hurst, R. E. PY - 2008 DA - 2008// TI - From microarray to biology: an integrated experimental, statistical and in silico analysis of how the extracellular matrix modulates the phenotype of cancer cells JO - BMC Bioinformatics VL - 9 UR - https://doi.org/10.1186/1471-2105-9-S9-S4 DO - 10.1186/1471-2105-9-S9-S4 ID - Dozmorov2008 ER - TY - JOUR AU - Draghici, S. AU - Khatri, P. AU - Tarca, A. L. AU - Amin, K. AU - Done, A. AU - Voichita, C. AU - Georgescu, C. AU - Romero, R. PY - 2007 DA - 2007// TI - A systems biology approach for pathway level analysis JO - Genome Res VL - 17 UR - https://doi.org/10.1101/gr.6202607 DO - 10.1101/gr.6202607 ID - Draghici2007 ER - TY - JOUR AU - Khatri, P. AU - Sellamuthu, S. AU - Malhotra, P. AU - Amin, K. AU - Done, A. AU - Draghici, S. PY - 2005 DA - 2005// TI - Recent additions and improvements to the Onto-Tools JO - Nucleic Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki472 DO - 10.1093/nar/gki472 ID - Khatri2005 ER -