Table 1 Summary of 1,000 Genomes Project dataset analysis
From: ASEQ: fast allele-specific studies from next-generation sequencing data
Individual ID | DNA mean coverage | RNA mean coverage | Het SNPs | Available genes | ASE genes | Imprinted available genes | Imprinted ASE genes | Fisher p-value |
|---|---|---|---|---|---|---|---|---|
NA06994 | 98 | 46 | 7397 | 1896 | 94 (5%) | 7 | 2 (28%) | 0.04 |
NA07357 | 71 | 139 | 7904 | 1889 | 71 (3.8%) | 9 | 2 (22%) | 0.04 |
NA10847 | 105 | 104 | 7490 | 1877 | 101 (5.4%) | 5 | 1 (20%) | 0.2 |
NA11831 | 74 | 126 | 7604 | 2002 | 101 (5%) | 3 | 0 | - |
NA11843 | 55 | 136 | 7361 | 1694 | 77 (4.5%) | 4 | 1 (25%) | 0.2 |
NA11894 | 148 | 107 | 6385 | 1683 | 91 (5.4%) | 2 | 2 (100%) | 0.003 |
NA11930 | 58 | 149 | 7320 | 1662 | 47 (2.8%) | 7 | 3 (30%) | 0.0008 |
NA11992 | 84 | 90 | 7724 | 1744 | 58 (3.3%) | 6 | 0 | - |
NA12004 | 59 | 94 | 7562 | 1544 | 48 (3.1%) | 3 | 1 (33%) | 0.09 |
NA12043 | 108 | 77 | 7759 | 1838 | 91 (5%) | 5 | 1 (20%) | 0.2 |
NA12045 | 81 | 122 | 7419 | 1841 | 58 (3.2%) | 3 | 0 | - |
NA12144 | 87 | 81 | 7844 | 2020 | 92 (4.6%) | 7 | 2 (28%) | 0.04 |
NA12155 | 83 | 113 | 7940 | 1802 | 87 (4.8%) | 4 | 2 (50%) | 0.01 |
NA12286 | 107 | 100 | 7572 | 1767 | 86 (4.9%) | 8 | 2 (25%) | 0.06 |
NA12348 | 134 | 124 | 6408 | 1400 | 50 (3.6%) | 4 | 2 (50%) | 0.008 |
NA12717 | 101 | 77 | 7467 | 1857 | 93 (5%) | 4 | 1 (25%) | 0.2 |
NA12750 | 118 | 89 | 8623 | 1972 | 108 (5.5%) | 4 | 1 (25%) | 0.2 |
NA12751 | 99 | 111 | 7396 | 2115 | 97 (4.6%) | 5 | 3 (60%) | 0.001 |
NA12842 | 182 | 141 | 7728 | 2074 | 163 (7.9%) | 7 | 2 (28%) | 0.1 |
NA12874 | 69 | 129 | 7297 | 1738 | 85 (4.9%) | 4 | 1 (25%) | 0.2 |
Average | 96.05 | 107.75 | 7510 | 1820.75 | 84.9 (4.6%) | 5.05 | 1.45 (29%) | - |