ASEQ: fast allele-specific studies from next-generation sequencing data

Table 3 Summary of Barbieri et al. dataset analysis

Individual ID	DNA mean coverage	RNA mean coverage	Het SNPs	Genes Available	ASE Genes
01-28R	109	107	7665	2138	259 (12.1%)
03-1426R	103	126	7677	2214	180 (8.1%)
03-2345R	93	124	7719	2594	78 (3%)
04-1084 L	102	115	7744	2610	275 (10.5%)
04-1243 L	103	108	7590	2399	151 (6.3%)
05-3595TTZ	165	114	7685	2499	146 (5.8%)
05-3852 L	104	114	7554	2169	223 (10.3%)
06-1749TR	167	113	7560	2688	258 (9.6%)
07-144R	107	99	7527	2540	322 (12.7%)
07-360TZ	108	139	7581	2364	160 (6.8%)
07-837 L	87	115	7506	2278	208 (9.1%)
2661_Dt	185	82	7829	2162	214 (9.9%)
2682_A	183	86	7701	1580	181 (11.5%)
2740_A	174	84	7572	1871	105 (5.6%)
2761_D	189	83	7552	2180	184 (8.4%)
2858_C	181	68	8084	2017	330 (16.4%)
2872_D	142	69	7663	1516	137 (9%)
2916_At	176	69	7722	1860	647 (34.8%)
3023_B62	193	96	7616	1956	688 (35.2%)
3026_B56	172	79	7851	1787	160 (9%)
3035_B53	163	69	7582	1679	177 (10.5%)
3036_B51	179	86	7618	1793	187 (10.4%)
Average	142.15	99.5	7669.9	2171.1	239.5 (11.6%)

For each individual we report the mean coverage in WES and RNA-seq data computed at SNP positions and the number of heterozygous SNPs identified from WES. Then we report the number of genes found available for ASE calculation along with the number of genes identified as ASE genes with corresponding percentages.