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Table 1 Synopsis of selected relevant biological processes enriched for genes mapping to grade-CpGs (p < 0.05)

From: The DNA methylation drift of the atherosclerotic aorta increases with lesion progression

Category

Genes

Fc-gamma receptor phagocytosis

DNM3, LYN, PIK3CD, WASF2, PIP5K1B, PIP5K1A, PRKCE, AMPH, MYO10, RAC1, SCIN, PPAP2A, DNM1

Type 2 diabetes mellitus

PRKCZ, IRS2, PIK3CD, CACNA1E, MAPK10, MAFA, CACNA1C, PRKCE, CACNA1A, CACNA1B

T-cell receptor signaling

HLA-DRB1, PRKAR1B, CREBBP, GNAS, CSK

Gene regulation by PPAR-alpha

LPL, PDGFA, PRKAR1B, EHHADH, CREBBP, HSPA1A, NCOR2

Interaction with ZEB1

949 genes*

Interaction with PPAR-gamma

924 genes*

Tissue specificity:

 

Leukocyte

CAST, KLF6, TRAF2, TNXB, HLA-DRB1, NTF3, MYO7A, RHD, HLA-C, TLR5, MEN1, JUP, CD9, IKBKE, UMPS, ADAP2, NT5E

Lymphocyte

HLA-DRB1, HLA-C, HLA-DPB1

  1. *List available upon request. PPAR, Peroxisome proliferator-activated receptor; ZEB1, Zinc finger E-box binding homeobox 1.