Table 4 The top SNPs associated with the trans -effected transcripts identified by SKAT
From: The cis and trans effects of the risk variants of coronary artery disease in the Chr9p21 region
Gene | Transcript | Top SNP | Coded allele | Non coded allele | MAF | Beta | SE | P value |
|---|---|---|---|---|---|---|---|---|
DUT | ENST00000331200 | rs16923583 | T | A | 0.9944 | 1.07 | 0.187 | 2.14e-08 |
EIF1AY | ENST00000361365 | rs41386451 | A | C | 0.9952 | 1.77 | 0.377 | 3.66e-06 |
CASP14 | ENST00000427043 | rs16923583 | T | A | 0.9944 | 1.25 | 0.236 | 1.95e-07 |
ABCA1 | ENST00000374736 | rs16905597 | G | A | 0.9951 | -0.58 | 0.108 | 1.65e-07 |
DHRS9 | ENST00000412271 | rs4977756 | A | G | 0.5635 | 0.35 | 0.089 | 9.84e-05 |