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Table 5 Gene set enrichment testing of KEGG pathway for nominally significant transcripts in Beta(0.5,0.5) and Beta(1,1) (p-value < 0.1)

From: The cis and trans effects of the risk variants of coronary artery disease in the Chr9p21 region

  Term Number of genes P value Enriched transcript
Beta(0.5,0.5) hsa00830:Retinol metabolism 5 0.016 ENST00000394887, ENST00000001146, ENST00000432060, ENST00000412271, ENST00000336356
  hsa04350:TGF-beta signaling pathway 4 0.056 ENST00000416274, ENST00000224764, ENST00000394092, ENST00000401753
  hsa00510:N-Glycan biosynthesis 3 0.077 ENST00000393487, ENST00000413355, ENST00000250498
Beta(1,1) hsa00830:Retinol metabolism 6 0.002 ENST00000335125, ENST00000394887, ENST00000001146, ENST00000432060, ENST00000412271, ENST00000336356
  hsa04350:TGF-beta signaling pathway 4 0.056 ENST00000416274, ENST00000224764, ENST00000394092, ENST00000401753