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Fig. 1 | BMC Medical Genomics

Fig. 1

From: OncoRep: an n-of-1 reporting tool to support genome-guided treatment for breast cancer patients using RNA-sequencing

Fig. 1

Flowchart illustrating tools used and their interactions within OncoRep. The four main branches (left to right) are variant calling, fusion gene detection, quality control and gene expression quantification and analysis (for a detailed description of each step see materials and methods). Results from each branch are analyzed, annotated and integrated and an HTML report is created at the final stage of the pipeline.

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