From: Integrative epigenomic and genomic filtering for methylation markers in hepatocellular carcinomas
Variables | GRASP | TSPYL5 |
---|---|---|
DNA hypermethylation, No (%) | 65 (98.5) | 64 (97.0) |
mRNA under-expression, No (%) | 45 (69.2) | 47 (73.4) |
 Expression difference, Mean (SD) | −1.63 (1.44)* | −1.67 (1.51)** |
 Methylation difference, Mean (SD) | 0.55 (0.13)* | 0.36 (0.11)** |
  Copy number loss, No (%) | 4 (8.9)†| 1 (2.1)†|
  Copy number gain, No (%) | 14 (31.1) | 33 (70.2) |
mRNA over-expression, No (%) | 20 (30.8) | 17 (26.6) |
 Expression difference, Mean (SD) | 0.93 (0.79)# | 1.12 (1.38)¶ |
 Methylation difference, Mean (SD) | 0.44 (0.30)# | 0.39 (0.07)¶ |
  Copy number gain, No (%) | 7 (35.0)‡ | 12 (70.6)‡ |
  Copy number loss, No (%) | 4 (30.0) | 0 (0.0) |