Table 1 Overview of database annotations
Category | Annotation | Example | Explanation |
|---|---|---|---|
Patient | Patient: Code | SUBJECT_4 | The originating publication ID for this patient was “SUBJECT_4” |
Patient | Patient: HAND Status | HIVE + ADC | This patient had two forms of HAND: HIVE and ADC |
Patient | Patient: Sex | M | This patient was male |
Patient | Patient: Risk Factor | IV Drug User | This patient may have contracted the HIV virus through IV drug use |
Patient | Patient: Viral Load At Sampling | Unknown Viral Load | Information on this patient’s viral load at time of sampling could not be found |
Patient | Patient: CD4 Count At Sampling | 5 cells/ul | This patient had a CD4 count of 5 cells/ul at time of sampling |
Patient | Patient: HIV Therapy Status | AZT | This patient had received AZT therapy prior to sampling |
Patient | Patient: HIV Therapy Months | 20 | This patient had received HIV therapy for 20 months prior to sampling |
Patient | Patient: Age At Sampling | 29 | This patient was 29 years of age at time of sampling |
Patient | Patient: Health At Sampling | AIDS | This patient had AIDS at time of sampling |
Sampling | Sampling: Year | 1993 | This sample was obtained in the year 1993 |
Sampling | Sampling: Country (City) | Japan (unknown) | This sample was obtained in an unknown city in the country of Japan |
Sampling | Sampling: Tissue | Spleen | This sample was obtained from spleen tissue |
Sequence | Sequence: Polyprotein (Protein) | Tat (gp160) | This sequence segment covers the Tat and Gp160 HIV regions |
Sequence | Sequence: Genotyping Information1 | B (B)* | This sequence was listed by the originating data source as a B subtype sequence. jpHMM genotyping confirmed subtype as B. Recombination testing detected recombination events in this sequence (indicated by the asterisk). |
Sequence | Sequence: Accession Number | U82096 | The sequence accession number for this sequence is U82096 |
Sequence | Sequence: PMID | 9718130 | The sequence PMID for this sequence is 9718130 |
Sequence | Sequence: Length in Nucleotides | 150 | The sequence length for this sequence segment is 150 nucleotides |
Sequence | HIV Sequence | cccaaat… | The nucleotide sequence for this sequence is “cccaaat…” |