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Table 2 Highly ranked SNPs associated with BSS

From: Identification of potential mutations and genomic alterations in the epithelial and spindle cell components of biphasic synovial sarcomas using a human exome SNP chip

SNPs Name Chr MapInfo Alleles Location P valuea Gene(s) Mutation(s) Bp F_C
exm68141 1 70890007 [A/G] EXON 0.00904 CTH Missense_V166M, V134M,Silent 70890007 0.222
exm279897 2 238742929 [T/C] EXON 0.00904 RBM44 Missense_I1015T 238742929 0.222
exm2090870 5 145537108 [T/C] EXON 0.007661 LARS Missense_R308H 145537108 0.625
exm508367 5 177633872 [A/T] EXON 0.004678 HNRNPAB Missense_Y173F, 177633872 1
exm509539 5 178634672 [T/C] EXON 0.008741 ADAMTS2 Missense_V245I 178634672 0.583
exm514146 6 6167833 [A/T] EXON 0.003445 F13A1 Missense_L589Q 6167833 1
exm534246 6 32038079 [T/G] EXON 0.00572 TNXB Missense_F1701L 32038079 0.357
exm597614 7 975046 [C/G] EXON 0.001565 ADAP1 Missense_V60L 975046 1
exm648916 7 106515241 [T/C] EXON 0.007888 PIK3CG Missense_A795V 106515241 0.3
exm1042751 12 120580489 [T/C] EXON 0.00394 GCN1L1 Missense_R1884Q 120580489 0.333
exm1091040 14 23945331 [C/G] EXON 0.006545 NGDN Missense_V172L 23945331 0.444
exm1133291 14 105415882 [T/C] EXON 0.003676 AHNAK2 Missense_R1969Q 105415882 0.5
exm1186826 15 89401134 [T/C] EXON 0.008741 ACAN Missense_L1773P 89401134 0.5
exm1233625 16 30666358 [A/G] EXON 0.004862 PRR14 Missense_R356Q 30666358 0.556
exm1391659 18 65180127 [A/C] EXON 0.007982 DSEL Missense_L583F 65180127 0.5
exm1925094 19 15567000 [A/G] EXON 0.004898 RASAL3 Missense_C546R 15567000 0.313
exm1456897 19 36134208 [A/G] EXON 0.005775 ETV2 Missense_D90N 36134208 0.438
exm1593372 22 24179922 [G/C] EXON 0.006903 DERL3 Missense_F149L 24179922 0.389
exm1618561 22 46763654 [T/C] EXON 0.003973 CELSR1 Missense_Y2684C 46763654 0.444
exm1631314 X 21674603 [A/G] EXON 0.006928 KLHL34 Missense_A435V 21674603 0.667
exm1651515 X 105451287 [T/A] EXON 0.009534 MUM1L1 Missense_D621V 105451287 1
exm1656996 X 129149891 [A/G] EXON 0.004388 BCORL1 Missense_R1048Q 129149891 0.25
exm1611652 22 41546158 [A/C] EXON 0.004417 EP300 Missense_S106G 41546158 0.611
  1. aChi-square test; F_C, the frequency of this variant in cases