Table 2 Study of model reproducibility: model learned from the T1D data set by switching training and test data subsets. Model learned from the T1D data set, with the same configuration as the model in Table 5 but switching training and test data subsets

6

32444658

SNP_A−1934589

A

G

1.09

{0}

0.22

{1}

6

30135583

SNP_A−2111335

A

G

0.74

{0}

6

32444815

SNP_A−4303523

A

G

0.62

{0, 1}

6

30726039

SNP_A−2240847

A

G

0.3

{0, 1, missing}

19

39266932

SNP_A−4281637

A

G

0.41

{0,1}

6

31112694

SNP_A−4293786

C

T

0.29

{0,1}

6

31277959

SNP_A−1863445

A

G

0.31

{0,1}

6

31278044

SNP_A−1949560

A

G

0.29

{0,1}

1

113630788

SNP_A−2235405

A

G

0.2

{0}