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Table 3 Highest AUC obtained by the genotype-based approach under the 10-fold cross validation sampling model

From: A comparison of genomic profiles of complex diseases under different models

Disease Median AUC Min AUC Max AUC Learning machine p-val threshold
BD 0.6619 0.635 0.7 LR wGRS 1e-2
CAD 0.6293 0.583 0.668 NBC 1e-4
HT 0.6039 0.572 0.627 LR wGRS 1e-2
IBD 0.6732 0.635 0.707 AdaBoostM1 1e-5
RA 0.8087 0.768 0.844 AdaBoostM1 1e-5
T1D 0.8806 0.853 0.914 AdaBoostM1 1e-5
T2D 0.6257 0.569 0.666 AdaBoostM1 1e-5