Table 3 Highest AUC obtained by the genotype-based approach under the 10-fold cross validation sampling model
From: A comparison of genomic profiles of complex diseases under different models
Disease | Median AUC | Min AUC | Max AUC | Learning machine | p-val threshold |
|---|---|---|---|---|---|
BD | 0.6619 | 0.635 | 0.7 | LR wGRS | 1e-2 |
CAD | 0.6293 | 0.583 | 0.668 | NBC | 1e-4 |
HT | 0.6039 | 0.572 | 0.627 | LR wGRS | 1e-2 |
IBD | 0.6732 | 0.635 | 0.707 | AdaBoostM1 | 1e-5 |
RA | 0.8087 | 0.768 | 0.844 | AdaBoostM1 | 1e-5 |
T1D | 0.8806 | 0.853 | 0.914 | AdaBoostM1 | 1e-5 |
T2D | 0.6257 | 0.569 | 0.666 | AdaBoostM1 | 1e-5 |