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Table 1 A list of proteins from the correctly predicted compound–protein pairs

From: Predicting target proteins for drug candidate compounds based on drug-induced gene expression data in a chemical structure-independent manner

Transcriptomic

Chemogenomic

Integrative

GeneName

Number

GeneName

Number

GeneName

Number

ADRB3

15

CYP2C9

22

ADRB3

17

CA1

5

CYP2C19

16

ADRA1D

7

DRD5

5

CYP1A2

14

TOP2B

7

HTR2B

5

CHRM4

6

CA1

6

ADRA1B

5

CHRM5

6

DRD5

6

CA7

4

CHRM3

5

ADRA2C

6

CACNG1

4

ESR2

5

CACNG1

5

CHRM4

4

DRD1

4

HTR2B

5

BCHE

4

DRD2

4

ADRA1B

5

SLC12A2

4

CA7

4

BCHE

5

CA12

4

HTR2C

4

CA12

5

ADRA2C

4

CA1

3

HTR2C

4

HTR2C

3

HRH1

3

CHRM5

4

CHRM5

3

HSD17B10

3

CA7

4

ADRA1D

3

HTR1B

3

DRD3

4

CACNA1I

3

ADRA1A

3

CHRM4

4

CA9

3

ADRA2A

3

CA3

4

SLC12A3

2

THPO

3

SLC12A2

4

CACNA1S

2

ALOX15

3

CA9

4

ABCC8

2

ADRA1D

3

CA14

4

HTR1B

2

CA3

3

CA4

4

DRD3

2

BCHE

3

HTR1A

3

HDAC2

2

SLC12A3

2

ESR1

3

DRD4

2

ESR1

2

CACNA1H

3

HTR1A

2

MAPT

2

CACNA1I

3

HTR7

2

PTGS1

2

SMN1/SMN2

3

ESR1

2

PTGS2

2

ESR2

3

ALOX12

2

ALDH1A1

2

CYP1A2

3

CA3

2

ABCC8

2

SLC12A3

2

CA4

2

DRD5

2

CACNA1S

2

CA14

2

KCNH2

2

ABCC8

2

GABRA3

2

CACNG1

2

HTR1B

2

GABRA2

2

HTR1A

2

HDAC2

2

SMN1/SMN2

2

ADRB3

2

DRD4

2

GABRA6

2

MTOR

2

PTGS1

2

GABRA4

2

SLC12A2

2

HTR7

2

PTGS1

2

  

ALOX12

2

ADRA1A

2

  

SLC6A3

2

    

RPS6KA3

2

    

DRD1

2

    

CHRM3

2

    

GABRA3

2

    

GABRA2

2

    

GABRA4

2

    

GABRA6

2

    

PKM

2

    

CYP2C9

2

    

CYP2C19

2

  1. Proteins in correctly predicted compound–protein pairs, which were obtained by using the transcriptomic approach, chemogenomic approach, and integrative approach, are listed. The list shows proteins that were correctly predicted multiple times