Fig. 4

Inter-predictor concordance of CS-based models (hgu133plus2 compendium). Comparisons between predictors of different types, e.g. SCM vs. SSP. The five panels show box and whisker plots for kappa statistics calculated over all subtypes and for each each subtype separately, as indicated on the left hand side. Results for individual datasets are superimposed as dots. The upper three BW plots in each panel show the inter-predictor concordance estimates between the SSP.cs, SCM.cs and STG.cs predictors pairs, as indicated by the legend. The bottom BW plot in each panel provides the concordance estimates for SCM.cs and STG.cs predictor pairs when based on the same modules, i.e. MGLs (with exception of PGR). Results are based on the hgu133plus2 compendium. Numerical details of the BW plots are presented in Additional file 2: Table S7