A pilot study on the prevalence of DNA palindromes in breast cancer genomes

BMC Medical Genomics

Table 1 Table of statistical significance values for Chr8 (a) and Chr11 (b). Genes with their regions, whether the gene is oncogene or brca gene with the statistical significance are shown in separate columns

Gene region	Gene symbol	Oncogene	Breast cancer gene	Odds ratio
Chromosome 8
intronic	SPIDR	FALSE	FALSE	12.5
intronic	EMC2	FALSE	FALSE	4.6
intergenic	CASC9	FALSE	FALSE	3.9
intronic	RAD54B	FALSE	FALSE	3.6
intronic	SH2D4A	FALSE	FALSE	3.6
intronic	MAK16	FALSE	FALSE	3.5
intronic	UBXN2B	FALSE	FALSE	3.4
intronic	KIAA1429	FALSE	FALSE	3.3
intronic	UBXN2B	FALSE	FALSE	3.0
exonic	SLC26A7	FALSE	FALSE	3.0
intronic	KIAA0196	FALSE	FALSE	2.8
intronic	POTEA	FALSE	FALSE	2.8
intergenic	UNC5D	FALSE	FALSE	2.7
intronic	CA1	FALSE	FALSE	2.7
intronic	EIF3E	TRUE	TRUE	2.5
intronic	CPQ	FALSE	FALSE	2.5
exonic	USP17L7	FALSE	FALSE	2.5
intronic	SH2D4A	FALSE	FALSE	2.5
exonic	C8orf37	FALSE	FALSE	2.5
intronic	SDC2	FALSE	FALSE	2.4
exonic	DCAF13	FALSE	FALSE	2.4
intronic	CPQ	FALSE	FALSE	2.4
intronic	CCAR2	TRUE	FALSE	2.4
ncRNA_intronic	LOC392232	FALSE	FALSE	2.4
exonic	GRHL2	FALSE	FALSE	2.4
intronic	TRPS1	TRUE	TRUE	2.3
Chromosome 11
intergenic	LOC283177	FALSE	FALSE	17.0
intronic	NFRKB	FALSE	FALSE	14.9
intronic	DCDC5	FALSE	FALSE	6.0
intronic	C2CD3	FALSE	FALSE	5.0
intergenic	LOC283177	FALSE	FALSE	4.2
intergenic	LOC102724301	FALSE	FALSE	4.1
intergenic	LOC283177	FALSE	FALSE	3.9
intergenic	FAM86C2P	FALSE	FALSE	3.9
intronic	KIRREL3	TRUE	FALSE	3.8
intronic	NUCB2	FALSE	FALSE	3.5
intronic	MYO7A	FALSE	FALSE	3.4
intergenic	MIR8068	FALSE	FALSE	3.2
intergenic	OR4A5	FALSE	FALSE	3.1
intronic	CADM1	TRUE	FALSE	3.0
intergenic	LOC283177	FALSE	FALSE	3.0
exonic	NXPE1	FALSE	FALSE	2.9
intronic	CWF19L2	FALSE	FALSE	2.8
intronic	PRCP	FALSE	FALSE	2.8
intergenic	LOC283177	FALSE	FALSE	2.7
intergenic	LOC283177	FALSE	FALSE	2.7
intronic	MYO7A	FALSE	FALSE	2.6
downstream	OR51B4	FALSE	FALSE	2.6
intergenic	LOC283177	FALSE	FALSE	2.5

ISSN: 1755-8794