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Table 1 Oncotator data sources used in workflow

From: CVE: an R package for interactive variant prioritisation in precision oncology

Annotation category Resource Comments
Genomic GENCODE Variant classification and mapping to gene
  Human DNA Repair Genes Curated list from [40]
Protein UniProt Protein-specific annotation
  dbNSFP Conservation and prediction scores
Cancer variant COSMIC Catalogue of Somatic Mutations in Cancer
Non-cancer variant 1000 Genomes Project Germline SNVs