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Table 5 Top 5 hub methylation features in subtype-specific association network and their degrees

From: Identifying subtype-specific associations between gene expression and DNA methylation profiles in breast cancer

Gene Name

Total

HER2 positive

Luminal A

Luminal B

Triple negative

Literature

LEP

9

2

1

6

0

[63, 64]

RET

6

2

1

3

0

[65, 66]

FGFR3

6

1

0

5

0

[37, 67]

PLA2G2A

6

1

3

2

0

 

ADCY5

6

2

0

4

0

 
  1. For each methylation node, the total number of connected edges that are present over four subtype-specific association networks is shown in the column Total. Remaining columns represent the degrees in the corresponding subtype-specific association network