From: Quantitative analysis of cryptic splicing associated with TDP-43 depletion
 | Species | Cell type | Protein | Depletion | Library type | Read type | Depth | Citation |
---|---|---|---|---|---|---|---|---|
1 | Human | HeLa | TDP-43 | siRNA | mRNA | l00bp PE | 97-116M | Ling, 2015 [25] |
2 | Mouse | ES | TDP-43 | Knockout | mRNA | l00bp PE | 70-75M | Ling, 2015 [25] |
3 | Human | K562 | TDP-43 | shRNA | Total RNA | l00bp PE | 55-62M | ENCODE |
4 | Human | K562 | TDP-43 | shRNA | mRNA | l00bp PE | 25-29M | ENCODE |
5 | Mouse | Adult brain | TDP-43 | ASO | mRNA | 75bp SE | 35-60M | Polymenidou, 2011 [23] |
6 | Mouse | ES | TDP-43 | Knockout | mRNA | 40bp SE | 2-11M | Chiang, 2010 [21] |
7 | Human | K562 | FUS | shRNA | mRNA | l00bp SE | 12-21M | ENCODE |
8 | Mouse | Adult brain | FUS | ASO | mRNA | 72bp SE | 20-60M | Lagier-Tourenne, 2012 [20] |
9 | Human | HeLa | hnRNP C | siRNA | mRNA | 72bp SE | 26-28M | Zarnack, 2013 [12] |