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Table 4 System settings for the iDash Challenge

From: Efficient and secure outsourcing of genomic data storage

Query 1a 2a 3a
 DATA_HASH_SIZE 48 48 48
 BITS FOR MAPPING 13 17 17
 NUM_ENTRIES 8192 131072 -
 ROW_SIZE 6 6 6
 ENCRYPTION MODE 80:1024:62:14 - -
 AGGREGATION 4 4 4
 DIMENSIONALITY 2 (46*45) 3 (32*32*32) -
Query 1b 2b 3b
 DATA_HASH_SIZE 48 48 48
 BITS FOR MAPPING 4 9 9
 NUM_ENTRIES 16 512 512
 ROW_SIZE 672 256 256
 ENCRYPTION MODE 80:1024:62:14 - -
 AGGREGATION 2 2 2
 DIMENSIONALITY 1 (8) 2 (16 ×16) 2 (16 ×16)
  1. Each setup pertains to a single query scenario →1: “query 4 variants in one single VCF file with 10,000 variants”; 2: “query 4 variants in one single VCF file with 100,000 variants”; 3: “query the same variant in 50 different VCF files with 100,000 variants”