chimer functional class | Min% | Max% | Average% | Median% |
---|
fusion-protein | 0.00360 | 93.79 | 16.87 | 9.16 |
3′ truncated-protein | 0.00034 | 99.64 | 15.19 | 6.54 |
cryptic splice-site | 0.00600 | 99.83 | 17.50 | 4.37 |
novel RNA | 0.00041 | 99.72 | 26.23 | 10.30 |
- Percent of fusion reads was calculated as fusion (chimeric) transcript reads divided by total reads (fusion read count + wild-type (non-fusion) 5′-gene read count + wild-type (non-fusion) 3′-gene read count) (see Methods). RSEM estimated normalized read counts were used. Metric shown in the table were calculated using 1535 breast cancer specific chimer transcripts