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Table 1 Infinium QC Array-24 variants sorted by their category and source

From: Clinical utility of the low-density Infinium QC genotyping Array in a genomics-based diagnostics laboratory

Marker Category Category Description Number of Markers
ADME Pharmacogenomics, from PharmADME.org 1009
AIM Ancestry Informative markers from exome array (http://genome.sph.umich.edu/wiki/Exome_Chip_Design#Ancestry_Informative_Markers) 2910
Blood group From NCBI’s dbRBC database covering 51 blood group defining genes http://www.ncbi.nlm.nih.gov/projects/gv/rbc/xslcgi.fcgi?cmd=bgmut/systems 1659
Fingerprint High MAF SNPs unlikely to be in LD with each other, from http://www.cstl.nist.gov/strbase/SNP.htm and http://alfred.med.yale.edu/alfred/index.asp 477
Linkage Linkage Panel by Illumina, contains heterozygous SNPs to test for Mendelian disorders, from Linkage 12 array 5486
Extended MHC Variants from extended major histocompatibility complex MHC covering 8 Mb region containing immune markers 930
Mitochondrial Determination of mtDNA haplogroups 141
Sex chromosomes X-chromosome specific 1840
Y-chromosome specific 1401
Pseudoautosomal Regions 535