From: iOPTICS-GSO for identifying protein complexes from dynamic PPI networks
Algorithms | Category | Cluster | Average Size | ||||||
---|---|---|---|---|---|---|---|---|---|
DIP | Krogan | MIPS | Gavin | DIP | Krogan | MIPS | Gavin | ||
CMC [16] | Density | 1263 | 907 | 168 | 486 | 4.39 | 4.56 | – | 5.55 |
COACH [17] | Core | 903 | 547 | 448 | 361 | 3.89 | 8.97 | – | 8.26 |
MCL [19] | Flow | 623 | 932 | – | 425 | 6.57 | 3.62 | – | 3.93 |
MCODE [15] | Density | 63 | 85 | 85 | 150 | 19.00 | 5.88 | – | 6.63 |
ClusterOne [18] | Graph | 372 | 373 | 256 | 312 | 4.90 | 4.29 | – | 6.35 |
CFinder [14] | Density | 609 | 88 | – | 137 | 6.18 | 12.73 | – | 9.6 |
DBSCAN [19] | Density | 492 | 96 | 130 | 24 | 6.26 | 34.43 | 14.3 | 12.7 |
OPTICS | Density | 107 | 278 | 439 | 108 | 5.90 | 4.17 | 9 | 13.5 |
OPTICS_PSO [20] | Density | 76 | 119 | 98 | 84 | 5.59 | 8.05 | 33 | 8.45 |
iOPTICS-GSO | Density | 99 | 143 | 86 | 101 | 5.76 | 5.62 | 26.5 | 8.14 |