From: iOPTICS-GSO for identifying protein complexes from dynamic PPI networks
Dataset | Algorithm | <E-15 | [E-15, E-10] | [E-10, E-5] | [E-5, 0.01] | <0.01 significant | ≥0.01 insignificant |
---|---|---|---|---|---|---|---|
DIP | COACH | 33(6.96%) | 44(9.28%) | 205(43.25%) | 126(26.58%) | 408(86.08%) | 66(13.92%) |
MCL | 19(1.80%) | 47(4.46%) | 183(17.38%) | 362(34.38%) | 611(58.02%) | 442(41.98%) | |
MCODE | 12(7.27%) | 17(10.30%) | 80(48.48%) | 38(23.03%) | 147(89.09%) | 18(10.91%) | |
ClusterOne | 21(3.66%) | 52(9.06%) | 177(30.84%) | 184(32.06%) | 434(75.61%) | 140(24.39%) | |
OPTICS | 7(7.87%) | 13(14.61%) | 40(44.94%) | 21(23.6%) | 81(91.01%) | 8(8.99%) | |
OPTICS_PSO | 5(6.85%) | 10(13.70%) | 27(36.99%) | 23(31.51%) | 65(89.04%) | 8(10.96%) | |
iOPTICS-GSO | 6(8.70%) | 15(21.74%) | 29(42.03%) | 13(18.84%) | 63(91.30%) | 6(8.70%) | |
Krogan | COACH | 23(10.41%) | 37(16.74%) | 91(41.18%) | 54(24.43%) | 205(92.76%) | 16(7.24%) |
MCL | 16(3.97%) | 43(10.67%) | 103(25.56%) | 119(29.53%) | 281(69.73%) | 122(30.27%) | |
MCODE | 8(5.00%) | 28(17.50%) | 68(42.50%) | 46(28.75%) | 150(93.75%) | 10(6.25%) | |
ClusterOne | 13(3.26%) | 43(10.78%) | 98(24.56%) | 120(30.08%) | 274(68.67%) | 125(31.33%) | |
OPTICS | 13(8.44%) | 26(16.88%) | 56(36.36%) | 31(20.13%) | 126(81.82%) | 28(18.18%) | |
OPTICS_PSO | 9(9.47%) | 19(20.0%) | 41(43.16%) | 21(22.11%) | 90(94.74%) | 5(5.26%) | |
iOPTICS-GSO | 11(12.22%) | 23(25.56%) | 37(41.11%) | 19(21.11%) | 90(100%) | 0(0%) | |
MIPS | COACH | 16(4.04%) | 46(11.62%) | 145(36.62%) | 149(37.63%) | 356(89.9%) | 40(10.10%) |
MCL | 5(0.83%) | 13(2.15%) | 94(15.51%) | 220(36.30%) | 332(54.79%) | 274(45.21%) | |
MCODE | 5(3.70%) | 10(7.41%) | 70(51.58%) | 39(28.89%) | 124(91.85%) | 11(8.15%) | |
ClusterOne | 7(1.88%) | 16(4.30%) | 117(31.45%) | 126(33.87%) | 266(71.51%) | 106(28.49%) | |
OPTICS | 16(5.63%) | 6(2.11%) | 26(9.15%) | 74(26.06%) | 122(42.96%) | 162(57.04%) | |
OPTICS_PSO | 10(11.76%) | 3(3.53%) | 28(32.94%) | 30(35.29%) | 71(83.53%) | 14(16.47%) | |
iOPTICS-GSO | 7(11.67%) | 5(8.33%) | 12(20%) | 25(41.67%) | 49(81.67%) | 11(18.33%) | |
Gavin | COACH | 35(14.96%) | 39(16.67%) | 100(42.72%) | 55(23.50%) | 229(97.86%) | 5(2.14%) |
MCL | 22(9.69%) | 34(14.98%) | 88(38.77%) | 66(29.07%) | 110(92.51%) | 17(7.49%) | |
MCODE | 12(7.74%) | 20(12.90%) | 80(51.61%) | 39(25.16%) | 151(97.42%) | 4(2.58%) | |
ClusterOne | 31(10.62%) | 34(11.64%) | 118(40.41%) | 82(28.08%) | 292(90.75%) | 27(9.25%) | |
OPTICS | 20(18.52%) | 13(12.04%) | 53(49.07%) | 19(17.59%) | 105(97.22%) | 3(2.78%) | |
OPTICS_PSO | 15(18.07%) | 13(15.66%) | 38(45.78%) | 16(19.28%) | 82(98.80%) | 1(1.20%) | |
iOPTICS-GSO | 21(26.25%) | 11(13.75%) | 31(38.75%) | 16(20%) | 79(98.75%) | 1(1.25%) |