| BBC | EJC | BC0145 | BC0190 | CGBC025 | |
---|---|---|---|---|---|---|
hg19-unmapped PE reads | 19,995,200 | 12,453,737 | 29,541,269 | 17,104,576 | 28,010,855 | |
Bacteria | Mapped PE reads (%) | 15,504 (0.08%) | 31,653 (0.25%) | 1,432,423 (4.85%) | 50,310 (0.29%) | 45,858 (0.16%) |
Fungi | Mapped PE reads (%) | 451 (0.00%) | 456 (0.00%) | 590 (0.00%) | 1,153 (0.01%) | 996 (0.00%) |
Viruses/Phages | Mapped PE reads (%) | 1,367 (0.01%) | 677 (0.01%) | 1,528 (0.01%) | 26,749 (0.16%) | 1,267 (0.00%) |
Bacteria | #Contigs | 894 | 1,495 | 7,971 | 2,609 | 2,588 |
Max contig length | 900 | 2,287 | 16,248 | 2,035 | 3,911 | |
Min contig length | 64 | 64 | 64 | 64 | 64 | |
Median contig length | 211 | 227 | 231 | 214 | 220 | |
N50 | 215 | 266 | 1,616 | 219 | 237 | |
#contigs w/ size ≥250 bp (%) | 80 (9.0%) | 558 (37.3%) | 3,602 (45.2%) | 333 (12.8%) | 748 (28.9%) | |
#aligned contigs (also see Table 4) | 54 | 381 | 2,456 | 225 | 451 | |
Fungi | #contigs | 44 | 38 | 215 | 92 | 78 |
Max contig length | 315 | 235 | 352 | 427 | 262 | |
Min contig length | 65 | 64 | 64 | 64 | 64 | |
Median contig length | 71 | 84 | 71 | 84 | 73.5 | |
N50 | 99 | 192 | 78 | 192 | 127 | |
#contigs w/ size ≥250 bp (%) | 2 (4.6%) | 0 (0.0%) | 3 (1.4%) | 3 (3.3%) | 1 (1.3%) | |
#aligned contigs | 2 | 0 | 0 | 2 | 1 | |
Viruses/ phages | #Contigs | 75 | 62 | 287 | 155 | 72 |
Max contig length | 655 | 546 | 336 | 695 | 274 | |
Min contig length | 64 | 64 | 64 | 64 | 64 | |
Median contig length | 68 | 84 | 70 | 73 | 74 | |
N50 | 194 | 210 | 85 | 189 | 126 | |
#contigs w/ size ≥250 bp (%) | 9 (12.0%) | 7 (11.3%) | 10 (3.5%) | 13 (8.4%) | 1 (1.4%) | |
#aligned contigs | 7 | 5 | 2 | 10 | 0 |