Table 1 Basic characteristics of each SNPs for CD
From: Fuzzy set-based generalized multifactor dimensionality reduction analysis of gene-gene interactions
Index | rs number | MAF | Chromosome (gene) | p-value (rank) | Index | rs number | MAF | Chromosome (gene) | p-value (rank) |
|---|---|---|---|---|---|---|---|---|---|
1 | rs11805303 | 0.347 | 1 (IL23R) | 1.41E-12 (2) | 16 | rs1456893 | 0.304 | 7 | 2.54E-05 (18) |
2 | rs12035082 | 0.410 | 1 | 4.34E-07 (9) | 17 | rs4263839 | 0.313 | 9 (NFSF15) | 1.53E-05 (17) |
3 | rs10801047 | 0.079 | 1 | 7.31E-06 (15) | 18 | rs17582416 | 0.363 | 10 (OC105376492) | 1.28E-03 (23) |
4 | rs11584383 | 0.297 | 1 (MROH3P) | 3.71E-05 (20) | 19 | rs10995271 | 0.413 | 10 | 1.28E-05 (16) |
5 | rs3828309 | 0.453 | 2 (ATG16L1) | 7.57E-14 (1) | 20 | rs10883365 | 0.498 | 10 (INC01475) | 2.56E-06 (12) |
6 | rs9858542 | 0.299 | 3 (BSN) | 2.50E-07 (8) | 21 | rs7927894 | 0.408 | 11 | 1.50E-02 (28) |
7 | rs17234657 | 0.146 | 5 | 4.90E-12 (3) | 22 | rs11175593 | 0.017 | 12 (OC105369735) | 5.71E-02 (30) |
8 | rs9292777 | 0.367 | 5 | 2.02E-11 (4) | 23 | rs3764147 | 0.222 | 13 (LACC1) | 3.78E-06 (13) |
9 | rs10077785 | 0.220 | 5 (C5orf56) | 5.00E-05 (22) | 24 | rs17221417 | 0.310 | 16 (NOD2) | 5.44E-10 (5) |
10 | rs13361189 | 0.084 | 5 | 5.96E-08 (6) | 25 | rs2872507 | 0.491 | 17 | 1.36E-03 (24) |
11 | rs4958847 | 0.130 | 5 (IRGM) | 9.19E-07 (10) | 26 | rs744166 | 0.422 | 17 (STAT3) | 4.99E-05 (21) |
12 | rs11747270 | 0.099 | 5 (IRGM) | 2.54E-05 (19) | 27 | rs2542151 | 0.181 | 18 | 2.04E-07 (7) |
13 | rs6887695 | 0.329 | 5 | 6.86E-03 (27) | 28 | rs1736135 | 0.412 | 21 (LOC101927745) | 2.98E-02 (29) |
14 | rs6908425 | 0.214 | 6 (CDKAL1) | 1.01E-06 (11) | 29 | rs2836754 | 0.374 | 21 (LOC400867) | 6.03E-06 (14) |
15 | rs7746082 | 0.293 | 6 | 4.13E-03 (26) | 30 | rs762421 | 0.408 | 21 (LOC105377139) | 3.46E-03 (25) |