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Fig. 1 | BMC Medical Genomics

Fig. 1

From: Mut2Vec: distributed representation of cancerous mutations

Fig. 1

The overview of Mut2Vec Pipeline. Our pipeline is composed of two modules: an embedding module based on Skip-Gram and a vector post-processing module equipped with retrofitting. In our pipeline, we make four mutation embedding models. The first model uses only the Skip-Gram module on mutation profiles, and we call the model basic Mut2Vec. In our Mut2Vec+PI model, the weight matrix in the Skip-Gram model is initialized with PubMed word vectors. In our Mut2Vec+R model, the output vectors of the basic Mut2Vec model is post-processed in the retrofitting module. In our Mut2Vec+PI+R model, both the initialization with PubMed word vectors and the post-processing are applied

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