Table 1 Downloaded datasets with Accession ID, Pubmed-ID and annotations, aprotected access
Dataset-Identifier | Study summary | Reference | # Samples | # Entities | Type | Comments |
|---|---|---|---|---|---|---|
SRP012682a | Common Fund (CF) Genotype-Tissue Expression Project (GTEx); Protected access via dbGap (phs000424) | [16] | 3926 | 30 | tissues | non cancer |
ERP003613, ERP006650 | HPA RNA-seq normal tissues | [17] | 204 | 30 | tissues | non cancer |
SRP017583 | Transcriptome landscape of the human placenta | [18] | 6 | 1 | tissues | placenta |
SRP051688 | A cell-based systems biology assessment of human blood to monitor immune responses after influenza vaccination | [19] | 55 | 7 | cell types | immune cells |
SRP056159 | Disease-Associated SNPs from non-Coding Regions in Juvenile Idiopathic Arthritis Are Located Within or Adjacent to Functional Genomic Elements of Human Neutrophils and CD4+ T Cells | [20] | 3 | 1 | cell types | neutrophils |
ERP003815 | Next generation sequencing analysis of human platelet PolyA+ mRNAs and rRNA-depleted total RNA. | [22] | 3 | 1 | cell types | platelets |
SRP010483 | The human pancreatic islet transcriptome: expression of candidate genes for type 1 diabetes and the impact of pro-inflammatory cytokines | [21] | 5 | 1 | cell tyes | pancreatic islets |
SRP034875 | Comprehensive analysis of gene expression in human retina and supporting tissues | [58] | 16 | 1 | tissue | retina |
SRP015336 | Transcriptome analyses of the human retina identify unprecedented transcript diversity and 3.5Â Mb of novel transcribed sequence via significant alternative splicing and novel genes. | [59] | 4 | 1 | tissue | retina |
SRP058719 | Long non-coding RNA profiling of human lymphoid progenitor cells reveals transcriptional divergence of B cell and T cell lineages. | [24] | 18 | 5 | cell types | hematopoietic stem cells |
EGAD00001000745a | Transcriptional diversity during lineage commitment of human blood progenitors | [23] | 83 | 8 | cell types | hematopoietic stem cells |