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Table 4 Regulatory miRNAs associated with the common PD-specific genes identified in blood and the analysis of lncRNAs associated with these miRNAs

From: A meta-analysis of public microarray data identifies biological regulatory networks in Parkinson’s disease

PD specific genes

miRNAs associated with genes

lncRNAs associated with the miRNAs

HSPA6

hsa-miR-204-3pb

LINC00999

hsa-miR-548o-3p

CASC7, GABPB1-AS1, NEAT1, XIST

MAP2K6

hsa-miR-33a-5pa

KCNQ1OT1, MCF2L-AS1

hsa-miR-590-3pa

CASC7, CTA-292E10.9, CTB-89H12.4, HCG11, LINC00657, LOC100507577, NEAT1, OIP5-AS1, OTUD6B-AS1, RP11-834C11.4, XIST

hsa-miR-145-5pa

KCNQ1OT1,TUG1

hsa-miR-425-5p

C1orf132, CTD-3025 N20.3, KCNQ1OT1, RP11-15H20.7, SNHG14, TTTY15, ZNRD1-AS1

hsa-miR-1306-5p

KCNQ1OT1, SENP3-EIF4A1

hsa-miR-148a-3pa

CASC7, KCNQ1OT1, OIP5-AS1, SNHG14

hsa-miR-130a-3pa

CASC7, H19, SNHG14

hsa-miR-148b-3pa

CASC7, OIP5-AS1, SLMO2-ATP5E, SNHG14

SRPK2

hsa-miR-3200-3p

BLOC1S5-TXNDC5, KCNQ1OT1, XIST

hsa-miR-1292

 

hsa-miR-155-5p

CTD-2561 J22.5, RP11-175O19.4, XIST

hsa-miR-15b-3pa

 

hsa-miR-17-3pb

RP3-323A16.1, XIST

hsa-miR-181a-5pb

AC000403.4, CASC7, CTB-89H12.4, KCNQ1OT1, LINC00506, N4BP2L2-IT2, RP11-10E18.7, RP11-1134I14.8, RP11-147 L13.14, RP11-314B1.2, RP11-361F15.2, RP11-707A18.1, RP1-309I22.2, ZNF883, ZNRD1-AS1

hsa-miR-181b-5pb

CASC7, CTB-89H12.4, KCNQ1OT1, RP11-1134I14.8, XIST

hsa-miR-181c-5pb

CTB-89H12.4, KCNIP4-IT1, KCNQ1OT1, RP11-1134I14.8

hsa-miR-181db

 

hsa-miR-183-3pa

 

hsa-miR-1976

HNRNPUL2-BSCL2, KCNQ1OT1, LOC100129917, NEAT1, TSIX

hsa-miR-19a-3pb

FAM201A, H19, KCNA3, KCNQ1OT1, LINC00094, RP11-337C18.8, RP11-523G9.3, SNHG14

hsa-miR-19b-3pb

CASC7, FAM201A, H19, KCNA3, KCNQ1OT1, LINC00094, RP11-337C18.8, RP11-523G9.3, SNHG14

hsa-miR-21-5pa

 

hsa-miR-320a

ALMS1-IT1, CASC7, CTB-36H16.2, CTB-89H12.4, KCNIP4-IT1, LINC00663, LMCD1-AS1, MALAT1, NEAT1, RP11-145P16.3, XIST

hsa-miR-3685

KCNQ1OT1

hsa-miR-3689a-3p

TTTY15

hsa-miR-4518

 

hsa-miR-944

 

NOL7

hsa-miR-199b-3pa

CTB-89H12.4, ERVK3–1, XIST

hsa-miR-199a-3pb

CTB-89H12.4, ERVK3–1, XIST

hsa-miR-328

 

hsa-miR-129-5pa

CASC7, ERVK3–1, KCNQ1OT1, MALAT1, NEAT1,

hsa-miR-374a-5pa

CTC-444 N24.11, CTD-2561 J22.5, RP11-613D13.5, TRG-AS1, XIST, ZNRD1-AS1

hsa-miR-744-5p

FLJ16779,

hsa-miR-374b-5pa

CTA-292E10.9, CTC-444 N24.11, OIP5-AS1, RP11-221 J22.1, RP11-38P22.2, XIST,

hsa-miR-548o-3p

CASC7, GABPB1-AS1, NEAT1, XIST,

  1. aPreviously associated with several neurodegenerative diseases, but not PD
  2. bPreviously associated with PD