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Table 3 Comparison of differential isoform regulation between the three groups. The genes in bold font are those shared by two pairwise comparisons. The numbers in parenthesis are the number of events considered for the particular group comparison

From: Comprehensive off-target analysis of dCas9-SAM-mediated HIV reactivation via long noncoding RNA and mRNA profiling

AS types

L vs. Zero

O vs. Zero

L vs. O

A3SS (# of events)

(7244)

(7143)

(7239)

C8orf22

ANKRD11

BMP1

CLSPN

C11orf48

NFAT5

COBLL1

CNOT2

OCEL1

DAK

GNB2L1

ORMDL1

JOSD1

SETMAR

ST5

OCEL1

YWHAB

ZNF84

PIH1D1

ZNF587

 

A5SS (# of events)

(5399)

(5350)

(5407)

C17orf70

ANGPT1

HILPDA

MTMR2

CLEC2D

NBPF11

NOC2L

LAMA4

NDUFV2

RP5-1198O20.4

NAA60

NT5C

SMARCC2

SLC50A1

OXLD1

TWF1

TYSND1

RP4-583P15.15

ZNF30

 

SRRM1

  

TBC1D7

TYSND1

VPS52

chr1:32336239:32335947

MXE (# of events)

(4959)

(4946)

(5006)

CNOT1

CNOT1

AKIRIN1

DBNL

EIF4G2

DDHD2

DPY30

HMGN1

DEK

MPPE1

PTRH1

DPP3

PLA2G6

RPS6KC1

ELMOD3

SPDL1

TMBIM4

MPV17L

TMBIM6

TMEM116

RPS6KC1

UQCC1

chr7:143284899:143284974:+@chr7:143285348

TCTN1

WBP1

 

TMEM116

RI (# of events)

(4109)

(4057)

(4084)

CENPV

BAX

BAX

MRRF

CAPRIN2

FANCI

RP11-5A19.5

CDK5RAP3

HSD17B4

RPRD2

CENPV

MTA1

SMTN

GPS2

TAB3

 

IMPDH2

 

QARS

SERAC1

SE (# of events)

(25,942)

(25,835)

(25,969)

C2CD5

AC013394.2

AC013394.2

CDC42BPA

AGPAT2

AC124789.1

DCTD

ATG7

ARID1B

DSC3

B3GALNT2

ATG10

GRB10

BCL2L12

ATG7

HMGN1

CENPU

B3GALNT2

KCTD17

CMTR2

BBS1

LINC00570

GABPB2

BCL2L12

MIPOL1

HMGN1

BTBD7

MRPL52

IMMP1L

CD320

NCSTN

KDM6A

CD59

NUMB

KLHL5

DCTD

PDE4DIP

MAPK9

LINC00472

PXK

MRPL52

MAPK9

RAB40B

PTK2

MIR4435-1HG

SCMH1

SETD8

PTK2

SPATA20

SMURF2P1

RHBDD1

TMEM139

SP3

RP4-717I23.3

TTC23

TBL1XR1

RPS6KB2

ZNF138

TINF2

SP3

ZSCAN21

TMEM139

ST20-MTHFS

 

TMEM189

TBL1XR1

TOPORS

TOPORS

TRIP6

UBE2I

UBE2I

YDJC

VWA9

ZNF639

ZNF584

ZNF678

chr7:143284899:143284974