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Table 3 Comparison of differential isoform regulation between the three groups. The genes in bold font are those shared by two pairwise comparisons. The numbers in parenthesis are the number of events considered for the particular group comparison

From: Comprehensive off-target analysis of dCas9-SAM-mediated HIV reactivation via long noncoding RNA and mRNA profiling

AS types L vs. Zero O vs. Zero L vs. O
A3SS (# of events) (7244) (7143) (7239)
C8orf22 ANKRD11 BMP1
CLSPN C11orf48 NFAT5
COBLL1 CNOT2 OCEL1
DAK GNB2L1 ORMDL1
JOSD1 SETMAR ST5
OCEL1 YWHAB ZNF84
PIH1D1 ZNF587  
A5SS (# of events) (5399) (5350) (5407)
C17orf70 ANGPT1 HILPDA
MTMR2 CLEC2D NBPF11
NOC2L LAMA4 NDUFV2
RP5-1198O20.4 NAA60 NT5C
SMARCC2 SLC50A1 OXLD1
TWF1 TYSND1 RP4-583P15.15
ZNF30   SRRM1
   TBC1D7
TYSND1
VPS52
chr1:32336239:32335947
MXE (# of events) (4959) (4946) (5006)
CNOT1 CNOT1 AKIRIN1
DBNL EIF4G2 DDHD2
DPY30 HMGN1 DEK
MPPE1 PTRH1 DPP3
PLA2G6 RPS6KC1 ELMOD3
SPDL1 TMBIM4 MPV17L
TMBIM6 TMEM116 RPS6KC1
UQCC1 chr7:143284899:143284974:+@chr7:143285348 TCTN1
WBP1   TMEM116
RI (# of events) (4109) (4057) (4084)
CENPV BAX BAX
MRRF CAPRIN2 FANCI
RP11-5A19.5 CDK5RAP3 HSD17B4
RPRD2 CENPV MTA1
SMTN GPS2 TAB3
  IMPDH2  
QARS
SERAC1
SE (# of events) (25,942) (25,835) (25,969)
C2CD5 AC013394.2 AC013394.2
CDC42BPA AGPAT2 AC124789.1
DCTD ATG7 ARID1B
DSC3 B3GALNT2 ATG10
GRB10 BCL2L12 ATG7
HMGN1 CENPU B3GALNT2
KCTD17 CMTR2 BBS1
LINC00570 GABPB2 BCL2L12
MIPOL1 HMGN1 BTBD7
MRPL52 IMMP1L CD320
NCSTN KDM6A CD59
NUMB KLHL5 DCTD
PDE4DIP MAPK9 LINC00472
PXK MRPL52 MAPK9
RAB40B PTK2 MIR4435-1HG
SCMH1 SETD8 PTK2
SPATA20 SMURF2P1 RHBDD1
TMEM139 SP3 RP4-717I23.3
TTC23 TBL1XR1 RPS6KB2
ZNF138 TINF2 SP3
ZSCAN21 TMEM139 ST20-MTHFS
  TMEM189 TBL1XR1
TOPORS TOPORS
TRIP6 UBE2I
UBE2I YDJC
VWA9 ZNF639
ZNF584 ZNF678
chr7:143284899:143284974