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Table 1 Primer information: sequences and length of the amplified fragment

From: Progression-specific genes identified in microdissected formalin-fixed and paraffin-embedded tissue containing matched ductal carcinoma in situ and invasive ductal breast cancers

Gene

RefSeq_ID

Primer sequences (sense and antisense)

Size

COL10A1

NM_000493.3

5′- CCTACTCCTTATTTACGACGCAAT-3′

5′- TGAAAAGCCTTGAAAGAATGG-3’

107 bp

COL11A1

NM_001854.2

5’-TGATAATTTATGACAAAAGAACATACC-3′

5’-CCAGGTAGCCAAGACTTGAGTTTA-3’

94 bp

CSPG2

NM_004385.2

5’-GAATGGGATCCTGATGGAAC-3′

5’-AGTCCTCCATTCAGGCCTTT-3’

96 bp

GREM1

NM_013372.5

5’- TCATTTAAAAACGGCAAAGAA-3′

5′- TTCATGAAACTTGAAGCCAAA-3’

111 bp

KRT14

NM_000526.3

5’- CAGATCCCACTGGAAGATCC-3′

5′- AAGCTGTATTGATTGCCAGGA-3’

92 bp

MMP11

NM_005940.3

5’- AATCCAGGCCAAAAAGTTCA-3′

5′- CCTGGGACAGGATTGAGGTA-3’

100 bp

PLEKHC1

NM_006832.1

5’-GGCCATGTTCTAGTCTGTTGC-3′

5’-CTCTCCCTCGCACCCTTT-3’

93 bp

SULF1

NM_015170.1

5’- CAAATTAGCTGCTTGCCTGA-3′

5′- AACTTGAAATCTTTTTACAAAGCACA-3’

99 bp

THBS2

NM_003247.2

5’-AGGTTGATGAAACGTCATGTG-3′

5’-AAGTGCAGGGTTTCAGTGGT-3’

93 bp

GAPDH

NM_002046.3

5’-CTCCTCACAGTTGCCATGTA-3′

5′- GCACAGGGTACTTTATTTGATGG-3’

90 bp

ACTB

NM_007393

5’-TCCCCCAACTTGAGATGTATGAAG-3′

5’-AACTGGTCTCAAGTCAGTGTACAGG-3’

90 bp

YWHAZ

NM_003406.2

5’- TGGAGGGTCGTCTCAAGTAT-3′

5′- GCTCCGTCTCAATTTTCTCTC-3’

94 bp