Progression-specific genes identified in microdissected formalin-fixed and paraffin-embedded tissue containing matched ductal carcinoma in situ and invasive ductal breast cancers

Table 1 Primer information: sequences and length of the amplified fragment

Gene	RefSeq_ID	Primer sequences (sense and antisense)	Size
COL10A1	NM_000493.3	5′- CCTACTCCTTATTTACGACGCAAT-3′ 5′- TGAAAAGCCTTGAAAGAATGG-3’	107 bp
COL11A1	NM_001854.2	5’-TGATAATTTATGACAAAAGAACATACC-3′ 5’-CCAGGTAGCCAAGACTTGAGTTTA-3’	94 bp
CSPG2	NM_004385.2	5’-GAATGGGATCCTGATGGAAC-3′ 5’-AGTCCTCCATTCAGGCCTTT-3’	96 bp
GREM1	NM_013372.5	5’- TCATTTAAAAACGGCAAAGAA-3′ 5′- TTCATGAAACTTGAAGCCAAA-3’	111 bp
KRT14	NM_000526.3	5’- CAGATCCCACTGGAAGATCC-3′ 5′- AAGCTGTATTGATTGCCAGGA-3’	92 bp
MMP11	NM_005940.3	5’- AATCCAGGCCAAAAAGTTCA-3′ 5′- CCTGGGACAGGATTGAGGTA-3’	100 bp
PLEKHC1	NM_006832.1	5’-GGCCATGTTCTAGTCTGTTGC-3′ 5’-CTCTCCCTCGCACCCTTT-3’	93 bp
SULF1	NM_015170.1	5’- CAAATTAGCTGCTTGCCTGA-3′ 5′- AACTTGAAATCTTTTTACAAAGCACA-3’	99 bp
THBS2	NM_003247.2	5’-AGGTTGATGAAACGTCATGTG-3′ 5’-AAGTGCAGGGTTTCAGTGGT-3’	93 bp
GAPDH	NM_002046.3	5’-CTCCTCACAGTTGCCATGTA-3′ 5′- GCACAGGGTACTTTATTTGATGG-3’	90 bp
ACTB	NM_007393	5’-TCCCCCAACTTGAGATGTATGAAG-3′ 5’-AACTGGTCTCAAGTCAGTGTACAGG-3’	90 bp
YWHAZ	NM_003406.2	5’- TGGAGGGTCGTCTCAAGTAT-3′ 5′- GCTCCGTCTCAATTTTCTCTC-3’	94 bp