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Table 1 Notations and terminologies

From: Discovery and disentanglement of aligned residue associations from aligned pattern clusters to reveal subgroup characteristics

APC

Aligned Pattern Cluster (with categorical amino acid symbols)

APPC

Aligned Property Pattern Cluster (with mixed-mode chemical properties)

AR

Aligned Residue (for amino acid symbols in APC dataset)

ARP

Aligned Residue Property (for mixed-mode chemical properties in APC dataset)

ARA

Aligned Residue Association (Significant co-occurrence of two ARs in APCs)

ARPA

Aligned Residue Property Association (for APPC)

ARA/ARPA FM

ARA/ARPA Frequency Matrix

SR

adjusted Statistical Residual between two ARs/ARPs

SRV

ARA/ARPA adjusted Statistical Residual Vector Space

PCD

Principle Component Decomposition

RSRV

Re-projected SRV