APC | Aligned Pattern Cluster (with categorical amino acid symbols) |
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APPC | Aligned Property Pattern Cluster (with mixed-mode chemical properties) |
AR | Aligned Residue (for amino acid symbols in APC dataset) |
ARP | Aligned Residue Property (for mixed-mode chemical properties in APC dataset) |
ARA | Aligned Residue Association (Significant co-occurrence of two ARs in APCs) |
ARPA | Aligned Residue Property Association (for APPC) |
ARA/ARPA FM | ARA/ARPA Frequency Matrix |
SR | adjusted Statistical Residual between two ARs/ARPs |
SRV | ARA/ARPA adjusted Statistical Residual Vector Space |
PCD | Principle Component Decomposition |
RSRV | Re-projected SRV |