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Table 1 Data sources

From: Novel disease syndromes unveiled by integrative multiscale network analysis of diseases sharing molecular effectors and comorbidities

Dataset name Version Downloaded Source (URL) Data type derived
NIGHRI-EBI GWAS Catalog 2016 07/10/2016 https://www.ebi.ac.uk/gwas/docs/file-downloads Disease-to-SNP associations derived from GWAS
EMBL-EBI EFO 2016 07/10/2016 https://bioportal.bioontology.org/ontologies/EFO Disease branches
GTEx V6 05/04/2017 http://networkmedicine.org:3838/eqtl/ SNP-to-eQTL_RNA relations derived from eQTL studing associating SNPs to the regulated targets (RNAs)
dbSNP 142 08/25/2016 ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/ ASN1_flat/ SNP host gene or intergenic SNPs
HCUP 2013 09/01/2016 https://www.distributor.hcup-us.ahrq.gov/ Disease-patient relations
SNOMED Sep. 2015 11/2015 https://www.nlm.nih.gov/healthit/snomedct/us_edition.html Disease SNOMED-CT IDs
UMLS 2015AA 07/09/2015 https://www.nlm.nih.gov/research/umls/licensedcontent/umlsarchives04.html Disease UMLS IDs
HapMap LD 2009 10/11/2010 ftp://ftp.ncbi.nlm.nih.gov/hapmap/ld_data/ Linkage disequilibrium data
1000 Genome 2014 11/14/2014 ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ Linkage disequilibrium r^2