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Table 1 Summary of datasets analyzed in the meta-analysis

From: Meta-analysis of gene expression profiles in long-term non-progressors infected with HIV-1

Series Dataset
GEO ID
No. of Samples Sample Source Platform
Case Control
  LTNPs Controls  
1
(LC)
GSE6740 [1] 5 5 CD4+ T cell GPL96, Affymetrix Human Genome U133A array
GSE18233 [51] 16 8 CD4+ T cell GPL6884, Illumina Human WG-6 v3.0 expression bead chip
GSE23879 [2] 12 12 CD4+ T cell GPL8432, Illumina HumanRef-8 WG-DASL V3.0
  LTNPs HIV-ART  
2
(LH)
GSE6740 [1] 5 5 CD4+ T cell GPL96, Affymetrix Human Genome U133A array
GSE18233 [51] 16 73 CD4+ T cell GPL6884, Illumina Human WG-6 v3.0 expression bead chip
GSE28128 [52] 14 27 CD4+ T cell GPL8432, Illumina HumanRef-8 WG-DASL V3.0
  LTNPs HIV + ART  
3
(LA)
GSE18233 [51] 16 29 CD4+ T cell GPL6884, Illumina Human WG-6 v3.0 expression bead chip
GSE23879 [2] 12 15 CD4+ T cell GPL8432, Illumina HumanRef-8 WG-DASL V3.0
GSE53527 [53] 11 10 CD4+ T cell GPL10558, Illumina HumanT-12 V4.0 expression bead chip
  HIV-ART Controls  
4
(HC)
GSE6740 [1] 5 5 CD4+ T cell GPL96, Affymetrix Human Genome U133A array
GSE18233 [51] 70 8 CD4+ T cell GPL6884, Illumina Human WG-6 v3.0 expression bead chip
GSE9927 [54] 11 9 CD4+ T cell GPL570, Affymetrix Human Genome U133 plus2.0 array
  1. GEO Gene expression omnibus, GSE Gene expression series, No Number, HIV-ART Patients infected with HIV-1 without ART, HIV + ART Patients infected with HIV-1 with ART, LTNPs Long-term non-progressors, LC LTNPs vs. healthy controls, LH LTNPs vs. HIV-ART, LA LTNPs vs. HIV + ART, HC HIV-ART vs. healthy controls