Meta-analysis of gene expression profiles in long-term non-progressors infected with HIV-1

BMC Medical Genomics

Table 1 Summary of datasets analyzed in the meta-analysis

Series Dataset GEO ID		No. of Samples		Sample Source	Platform
Series Dataset GEO ID		Case	Control	Sample Source	Platform
		LTNPs	Controls
1 (LC)	GSE6740 [1]	5	5	CD4+ T cell	GPL96, Affymetrix Human Genome U133A array
	GSE18233 [51]	16	8	CD4+ T cell	GPL6884, Illumina Human WG-6 v3.0 expression bead chip
	GSE23879 [2]	12	12	CD4+ T cell	GPL8432, Illumina HumanRef-8 WG-DASL V3.0
		LTNPs	HIV-ART
2 (LH)	GSE6740 [1]	5	5	CD4+ T cell	GPL96, Affymetrix Human Genome U133A array
	GSE18233 [51]	16	73	CD4+ T cell	GPL6884, Illumina Human WG-6 v3.0 expression bead chip
	GSE28128 [52]	14	27	CD4+ T cell	GPL8432, Illumina HumanRef-8 WG-DASL V3.0
		LTNPs	HIV + ART
3 (LA)	GSE18233 [51]	16	29	CD4+ T cell	GPL6884, Illumina Human WG-6 v3.0 expression bead chip
	GSE23879 [2]	12	15	CD4+ T cell	GPL8432, Illumina HumanRef-8 WG-DASL V3.0
	GSE53527 [53]	11	10	CD4+ T cell	GPL10558, Illumina HumanT-12 V4.0 expression bead chip
		HIV-ART	Controls
4 (HC)	GSE6740 [1]	5	5	CD4+ T cell	GPL96, Affymetrix Human Genome U133A array
	GSE18233 [51]	70	8	CD4+ T cell	GPL6884, Illumina Human WG-6 v3.0 expression bead chip
	GSE9927 [54]	11	9	CD4+ T cell	GPL570, Affymetrix Human Genome U133 plus2.0 array

GEO Gene expression omnibus, GSE Gene expression series, No Number, HIV-ART Patients infected with HIV-1 without ART, HIV + ART Patients infected with HIV-1 with ART, LTNPs Long-term non-progressors, LC LTNPs vs. healthy controls, LH LTNPs vs. HIV-ART, LA LTNPs vs. HIV + ART, HC HIV-ART vs. healthy controls

ISSN: 1755-8794