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Table 1 Candidate driver genes positively selected (p-value ≤0.01) by each permutation model and their percentage (in brackets) of all genes tested for breast and lung cancer data

From: Comparison of different functional prediction scores using a gene-based permutation model for identifying cancer driver genes

Permutation model CADD DANN Fathmm-MKL coding Fathmm-MKL noncoding MetaLR SPIDEX VEST3 Unique genes Total genes
Breast 263 (1.3) 158 (0.8) 178 (0.9) 184 (0.9) 174 (0.9) 178 (0.9) 171 (0.9) 942 (4.7) 19,835
Lung 121 (0.6) 142 (0.7) 138 (0.7) 149 (0.7) 178 (0.9) 171 (0.9) 164 (0.8) 796 (4.0) 20,047