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Table 1 Performance of DeepDR and other models

From: Predicting drug response of tumors from integrated genomic profiles by deep neural networks

Measurement

DeepDR

Linear regression

SVM

Random initialization

PCA

Eenc only

Menc only

Median MSE in testing samplesa

1.96

10.24b

8.92c

2.30

2.44

1.96

3.09

Median number of training epochsa

14

–

–

9

29

17

9.5

  1. aMedian of 100 shuffles of training, validation, and testing samples
  2. bResult of one multivariate regression model
  3. cResults of 265 SVM models, each predicting IC50 for a drug
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BMC Medical Genomics

ISSN: 1755-8794

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