Table 1 Forty one mRNA biomarkers with relationship to coexpressed lncRNAs (qvalue< 0.05 for mRNA and qvalue < 0.05 for lncRNA)
mRNA | Gene | Gene expression | mRNA qvalue | lncRNA Probe name | relationship | lncRNA expression | lncRNA qvalue |
|---|---|---|---|---|---|---|---|
NM_000787 | DBH | down | 0.0153 | ASHG19A3A038177 | natural antisense | down | 0.0317 |
NM_015987 | HEBP1 | down | 0.0153 | ASHG19A3A048399 | bidirectional | down | 0.0252 |
NM_001172440 | ENDOU | down | 0.0161 | ASHG19A3A055103 | intronic antisense | down | 0.0285 |
NM_001130997 | FAM58A | up | 0.0170 | ASHG19A3A041726 | bidirectional | up | 0.0331 |
NM_000075 | CDK4 | up | 0.0216 | ASHG19A3A048765 | natural antisense | up | 0.0396 |
NM_000744 | CHRNA4 | down | 0.0218 | ASHG19A3A018571 | intronic antisense | down | 0.0285 |
NM_003074 | SMARCC1 | up | 0.0231 | ASHG19A3A022584 | intronic antisense | up | 0.0285 |
NM_025139 | ARMC9 | up | 0.0240 | ASHG19A3L0001156 | sense overlap | up | 0.0472 |
NM_014053 | FLVCR1 | up | 0.0270 | ASHG19A3A007495 | bidirectional | up | 0.0479 |
NM_000348 | SRD5A2 | down | 0.0271 | ASHG19A3L0001181 | exon sense-overlapping | down | 0.0357 |
NM_001012321 | RPSA | up | 0.0279 | ASHG19A3A020907 | natural antisense | down | 0.0293 |
NM_001334 | CTSO | down | 0.0284 | ASHG19A3A026206 | natural antisense | down | 0.0415 |
NM_030789 | HM13 | up | 0.0284 | ASHG19A3A017537 | intronic antisense | down | 0.0479 |
NM_000454 | SOD1 | down | 0.0311 | ASHG19A3A018779 | bidirectional | down | 0.0468 |
NM_002394 | SLC3A2 | up | 0.0314 | ASHG19A3A000043 | bidirectional | up | 0.0291 |
NM_144778 | MBNL2 | down | 0.0315 | ASHG19A3L0000699 | exon sense-overlapping | down | 0.0439 |
NM_001146279 | SHBG | down | 0.0315 | ASHG19A3A007528 | exon sense-overlapping | down | 0.0380 |
NM_003631 | PARG | up | 0.0328 | ASHG19A3A043936 | intronic antisense | up | 0.0289 |
NM_000182 | HADHA | down | 0.0330 | ASHG19A3A015417 | natural antisense | up | 0.0489 |
NM_003668 | MAPKAPK5 | up | 0.0333 | ASHG19A3A055106 | natural antisense | up | 0.0364 |
NM_016065 | MRPS16 | up | 0.0338 | ASHG19A3A044109 | bidirectional | up | 0.0362 |
NM_053031 | MYLK | down | 0.0338 | ASHG19A3A023105 | intronic antisense | up | 0.0285 |
NM_001040058 | SPP1 | up | 0.0355 | ASHG19A3A024471 | natural antisense | up | 0.0356 |
NM_145697 | NUF2 | up | 0.0355 | ASHG19A3A054586 | bidirectional | up | 0.0412 |
NM_172250 | MMAA | down | 0.0372 | ASHG19A3A024820 | natural antisense | down | 0.0409 |
NM_001003789 | RABL2B | down | 0.0378 | ASHG19A3A020631 | bidirectional | up | 0.0252 |
NM_001040060 | SPP1 | up | 0.0378 | ASHG19A3A024471 | natural antisense | up | 0.0356 |
NM_207304 | MBNL2 | down | 0.0379 | ASHG19A3L0000699 | exon sense-overlapping | down | 0.0439 |
NM_020791 | TAOK1 | up | 0.0382 | ASHG19A3A009329 | exon sense-overlapping | up | 0.0412 |
NM_016632 | ARL17A | up | 0.0395 | ASHG19A3A008470 | intron sense-overlapping | up | 0.0252 |
NM_014583 | LMCD1 | up | 0.0397 | ASHG19A3A020672 | bidirectional | down | 0.0311 |
NM_003937 | KYNU | down | 0.0405 | ASHG19A3A014435 | natural antisense | down | 0.0252 |
NM_000582 | SPP1 | up | 0.0418 | ASHG19A3A024471 | natural antisense | up | 0.0356 |
NM_014389 | PELP1 | up | 0.0419 | ASHG19A3A008987 | natural antisense | up | 0.0437 |
NM_148921 | EPN2 | down | 0.0433 | ASHG19A3A008042 | natural antisense | up | 0.0329 |
NM_001165031 | DTYMK | up | 0.0442 | ASHG19A3A007748 | exon sense-overlapping | up | 0.0285 |
NM_002482 | NASP | up | 0.0448 | ASHG19A3A044925 | natural antisense | up | 0.0489 |
NM_000128 | F11 | down | 0.0449 | ASHG19A3A025095 | natural antisense | down | 0.0252 |
NM_002022 | FMO4 | down | 0.0468 | ASHG19A3A034907 | intron sense-overlapping | down | 0.0446 |
NM_001127603 | NMRK1 | down | 0.0470 | ASHG19A3A037588 | exon sense-overlapping | down | 0.0331 |
NM_003889 | NR1I2 | down | 0.0471 | ASHG19A3A021464 | natural antisense | down | 0.0291 |