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Table 5 15 GWAS SNPs overlap with ENCODE ChIP-Seq TFBS profiles (161 TFs; http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeRegTfbsClustered/)

From: FTO haplotyping underlines high obesity risk for European populations

rs_id pos TF Score Peak size, bp
rs9940128 53,800,753 EP300 763 390
rs9940128 53,800,753 FOSL2 424 260
rs9940128 53,800,753 NFIC 351 544
rs9940128 53,800,753 SP1 273 336
rs9940128 53,800,753 JUND 211 332
rs9940128 53,800,753 TEAD4 173 440
rs9940128 53,800,753 FOXA2 183 290
rs9940128 53,800,753 MYBL2 403 616
rs9940128 53,800,753 FOS 339 283
rs9940128 53,800,753 STAT3 241 336
rs1421085 53,800,953 FOS 339 283
rs1121980 53,809,246 USF1 144 264
rs1121980 53,809,246 SPI1 216 263
rs62033400 53,811,787 MAFK 266 287
rs8050136 53,816,274 EP300 268 330
rs8050136 53,816,274 FOXA1 204 240
rs8050136 53,816,274 GATA3 231 296
rs7202116 53,821,614 FOS 299 275
rs7202116 53,821,614 MAFK 1000 290
rs7202116 53,821,614 MAFF 852 280
rs17817964 53,828,065 GATA3 213 296
  1. Score varies from 1 to 1000
  2. Highly scored TFs are marked with bold