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Table 1 Comparison of the SNPs number between ASA and Karyomap-12 in each window at different minor allele frequencies

From: BasePhasing: a highly efficient approach for preimplantation genetic haplotyping in clinical application of balanced translocation carriers

Content MAF = 0–0.5 MAF = 0.1–0.5 MAF = 0.25–0.5
ASA Karyomap-12 ASA Karyomap-12 ASA Karyomap-12
SNPs No. 698,500 294,602 291,178 227,939 149,323 133,180
effective windows No.a 1476 1464 1461 1449 1458 1444
Average No. of SNPs in each window 473.2 201.2 199.3 157.3 102.4 92.2
≥50 SNPs windows No. 1459 1417 1395 1387 1257 1260
Accordance rateb 98.85% 96.00% 94.51% 93.97% 85.16% 85.37%
  1. MAF: minor allele frequency
  2. athe number of windows that had SNP loci in bead chip
  3. bmeaning the percentage of ≥50 SNPs windows number divided by the effective windows No