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Table 1 Comparison of the SNPs number between ASA and Karyomap-12 in each window at different minor allele frequencies

From: BasePhasing: a highly efficient approach for preimplantation genetic haplotyping in clinical application of balanced translocation carriers

Content

MAF = 0–0.5

MAF = 0.1–0.5

MAF = 0.25–0.5

ASA

Karyomap-12

ASA

Karyomap-12

ASA

Karyomap-12

SNPs No.

698,500

294,602

291,178

227,939

149,323

133,180

effective windows No.a

1476

1464

1461

1449

1458

1444

Average No. of SNPs in each window

473.2

201.2

199.3

157.3

102.4

92.2

≥50 SNPs windows No.

1459

1417

1395

1387

1257

1260

Accordance rateb

98.85%

96.00%

94.51%

93.97%

85.16%

85.37%

  1. MAF: minor allele frequency
  2. athe number of windows that had SNP loci in bead chip
  3. bmeaning the percentage of ≥50 SNPs windows number divided by the effective windows No